RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 OR1L8Q8NGR8 309 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 ACTR3CQ9C0K3 210 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-230ENST00000557427 COMMD5Q9GZQ3 224 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 MAP1LC3BQ9GZQ8 125 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 NPVFQ9HCQ7 196 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 NDUFA4L2Q9NRX3 87 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 SMAD5-AS1Q9Y6J3 95 aa9.67□□□□□ -0.86
SHMT2-230ENST00000557427 A0A1W2PN81 502 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 NBR2O15453 112 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 IFNA1P01562 189 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 RPLP1P05386 114 aaKnown RBP9.66□□□□□ -0.86
SHMT2-230ENST00000557427 SRP19P09132 144 aaKnown RBP9.66□□□□□ -0.86
SHMT2-230ENST00000557427 MYOD1P15172 320 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 CHRNA7P36544 502 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 OPRK1P41145 380 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 NPBWR1P48145 328 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 LCN15Q6UWW0 184 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 SSX7Q7RTT5 188 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 RPP25LQ8N5L8 163 aaKnown RBP9.66□□□□□ -0.86
SHMT2-230ENST00000557427 TEX45Q8NA69 505 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 OR10G9Q8NGN4 311 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 OR10G7Q8NGN6 311 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 RARRES2Q99969 163 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 HINT2Q9BX68 163 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 SLC39A9Q9NUM3 307 aa9.66□□□□□ -0.86
SHMT2-230ENST00000557427 TMA7Q9Y2S6 64 aaKnown RBP9.66□□□□□ -0.86
SHMT2-230ENST00000557427 FAM74A7A6NL05 159 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 SEC14L6B5MCN3 397 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 CYB5BO43169 146 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 RNASE2P10153 161 aaKnown RBP9.65□□□□□ -0.86
SHMT2-230ENST00000557427 BCL2P10415 239 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 TAGLN2P37802 199 aaKnown RBP9.65□□□□□ -0.86
SHMT2-230ENST00000557427 PLGLAQ15195 96 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 HAGHQ16775 308 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 C5orf64Q2M2E5 130 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 FAM74A3Q4VXF1 159 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.65□□□□□ -0.86
SHMT2-230ENST00000557427 KLHL30-AS1Q8NEE0 82 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 NPBQ8NG41 125 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 RAX2Q96IS3 184 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 RNF5Q99942 180 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 FBXL15Q9H469 300 aa9.65□□□□□ -0.86
SHMT2-230ENST00000557427 SMCO3A2RU48 225 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 G3V318 75 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 FCN1O00602 326 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 CRYGBP07316 175 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 FRMD6-AS1P0C7T7 363 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 MAS1LP35410 378 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 ERHP84090 104 aaKnown RBP9.64□□□□□ -0.87
SHMT2-230ENST00000557427 SOHLH1Q5JUK2 328 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 TEPPQ6URK8 271 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 RXFP4Q8TDU9 374 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 MGST2Q99735 147 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 GGTLC1Q9BX51 225 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 ZNF430Q9H8G1 570 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-230ENST00000557427 GNG13Q9P2W3 67 aa9.64□□□□□ -0.87
SHMT2-230ENST00000557427 ZNF256Q9Y2P7 627 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-230ENST00000557427 IGHV7-81A0A0B4J1V7 117 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 IGF1P05019 195 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 ELANEP08246 267 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 OR13C7P0DN81 318 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 CDC34P49427 236 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-230ENST00000557427 FOXE3Q13461 319 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 RAB31Q13636 194 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 MRGPRG-AS1Q2M3A8 158 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 C9orf66Q5T8R8 295 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 FAM122CQ6P4D5 195 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 MMD2Q8IY49 270 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 ABHD5Q8WTS1 349 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 RAB24Q969Q5 203 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 ZMAT4Q9H898 229 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 MANBALQ9NQG1 85 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 VAX2Q9UIW0 290 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 PXMP4Q9Y6I8 212 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 TNCP24821 2201 aa9.63□□□□□ -0.87
SHMT2-230ENST00000557427 HECTD4Q9Y4D8 3996 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 TRAV41A0A0B4J266 112 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 CGB1A6NKQ9 187 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 TSPAN4O14817 238 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 ATP6V0E1O15342 81 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 SLC25A17O43808 307 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 YIF1AO95070 293 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 HLA-DRB1P01911 266 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 GPX4P36969 197 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-230ENST00000557427 RPL29P47914 159 aaKnown RBP9.62□□□□□ -0.87
SHMT2-230ENST00000557427 SUB1P53999 127 aaKnown RBP eCLIP9.62□□□□□ -0.87
SHMT2-230ENST00000557427 FGF8P55075 233 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-230ENST00000557427 CX3CL1P78423 397 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 CFHR3Q02985 330 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 PSG5Q15238 335 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 RHEBQ15382 184 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 DEFB136Q30KP8 78 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 TMEM144Q7Z5S9 345 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 RNASEH2CQ8TDP1 164 aaKnown RBP9.62□□□□□ -0.87
SHMT2-230ENST00000557427 CACNG8Q8WXS5 425 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 TM2D3Q9BRN9 247 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 KLK15Q9H2R5 256 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 SLC25A22Q9H936 323 aa9.62□□□□□ -0.87
SHMT2-230ENST00000557427 ZFP92A6NM28 416 aa9.61□□□□□ -0.87
SHMT2-230ENST00000557427 CCL24O00175 119 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms