RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 SHPKQ9UHJ6 478 aa7.89□□□□□ -1.15
SYNE2-227ENST00000557307 PKD1P98161 4303 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 IGKV1OR2-108A0A075B7D4 117 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 HELTA6NFD8 242 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 FABP12A6NFH5 140 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 PITX3O75364 302 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 IFNA10P01566 189 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 CD5P06127 495 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 SLC25A4P12235 298 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 CCR6P51684 374 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 GAMTQ14353 236 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 Q6ZTC4 211 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 TMED4Q7Z7H5 227 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 LGI3Q8N145 548 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 Q8WTZ3 238 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 C17orf77Q96MU5 243 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 BCL7BQ9BQE9 202 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 RSL24D1Q9UHA3 163 aaKnown RBP7.88□□□□□ -1.15
SYNE2-227ENST00000557307 SCP2D1Q9UJQ7 156 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 APLNQ9ULZ1 77 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 KIAA1109Q2LD37 5005 aa7.88□□□□□ -1.15
SYNE2-227ENST00000557307 FXYD7P58549 80 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 OR2F1Q13607 317 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 LGALS9CQ6DKI2 356 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 SIGLEC15Q6ZMC9 328 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 RNF125Q96EQ8 232 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 PBDC1Q9BVG4 233 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 RBM38Q9H0Z9 239 aaKnown RBP7.87□□□□□ -1.15
SYNE2-227ENST00000557307 NRN1Q9NPD7 142 aa7.87□□□□□ -1.15
SYNE2-227ENST00000557307 IGLL5B9A064 214 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 PRSS46E5RG02 174 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 SOCS3O14543 225 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 IGKV3-20P01619 116 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 RD3LP0DJH9 198 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 SPP1P10451 314 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 HLA-DMBP28068 263 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 PPP1R1AQ13522 171 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 PYDC2Q56P42 97 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 MORN3Q6PF18 240 aaPredicted RBP7.86□□□□□ -1.15
SYNE2-227ENST00000557307 TMEM182Q6ZP80 229 aaPredicted RBP7.86□□□□□ -1.15
SYNE2-227ENST00000557307 OR1S1Q8NH92 325 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 C2CD4CQ8TF44 421 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 MAGT1Q9H0U3 335 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 XCL2Q9UBD3 114 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 KCNIP3Q9Y2W7 256 aa7.86□□□□□ -1.15
SYNE2-227ENST00000557307 DYNC1H1Q14204 4646 aaKnown RBP7.86□□□□□ -1.15
SYNE2-227ENST00000557307 F6UB75 175 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 H3BMM0 161 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 IFNA4P05014 189 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 GATA2P23769 480 aaPredicted RBP7.85□□□□□ -1.15
SYNE2-227ENST00000557307 EIF2B2P49770 351 aaKnown RBP7.85□□□□□ -1.15
SYNE2-227ENST00000557307 LYZP61626 148 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 CCDC190Q86UF4 302 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 NARS2Q96I59 477 aaKnown RBP7.85□□□□□ -1.15
SYNE2-227ENST00000557307 C20orf173Q96LM9 149 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 MFFQ9GZY8 342 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 RABL2AQ9UBK7 228 aaPredicted RBP7.85□□□□□ -1.15
SYNE2-227ENST00000557307 RABL2BQ9UNT1 228 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 U3KQ87 197 aa7.85□□□□□ -1.15
SYNE2-227ENST00000557307 PKHD1P08F94 4074 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 ZFP92A6NM28 416 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 H3BP45 60 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 NOL3O60936 208 aaKnown RBP7.84□□□□□ -1.15
SYNE2-227ENST00000557307 SCGB2A1O75556 95 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 CCNKO75909 580 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 HOXB5P09067 269 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 PRB4P10163 310 aaPredicted RBP7.84□□□□□ -1.15
SYNE2-227ENST00000557307 HLA-DRB4P13762 266 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 MIFP14174 115 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 VAMP1P23763 118 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 C12orf74Q32Q52 190 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 ETFRF1Q6IPR1 90 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 TOMM5Q8N4H5 51 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 LRTM2Q8N967 370 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 SLC35E1Q96K37 410 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 HRH4Q9H3N8 390 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 TBC1D24Q9ULP9 559 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 FLVCR2Q9UPI3 526 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 HLA-DRB4X5D2U9 266 aa7.84□□□□□ -1.15
SYNE2-227ENST00000557307 IGHV4-4A0A075B6R2 117 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 WRBO00258 174 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 ADAP1O75689 374 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SFT2D2O95562 160 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 ANXA3P12429 323 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 BAK1Q16611 211 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 TMEM128Q5BJH2 165 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 GGNBP1Q5YKI7 109 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 ZNF709Q8N972 641 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 THAP8Q8NA92 274 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SCGB3A2Q96PL1 93 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SDHCQ99643 169 aaPredicted RBP7.83□□□□□ -1.16
SYNE2-227ENST00000557307 KRTAP17-1Q9BYP8 105 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SRRQ9GZT4 340 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SLC35B3Q9H1N7 401 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 SLC25A32Q9H2D1 315 aa7.83□□□□□ -1.16
SYNE2-227ENST00000557307 PAIP2BQ9ULR5 123 aaKnown RBP7.83□□□□□ -1.16
SYNE2-227ENST00000557307 DUXBA0A1W2PPF3 345 aa7.82□□□□□ -1.16
SYNE2-227ENST00000557307 BTCP35070 178 aa7.82□□□□□ -1.16
SYNE2-227ENST00000557307 GPX4P36969 197 aaPredicted RBP7.82□□□□□ -1.16
SYNE2-227ENST00000557307 SRPXP78539 464 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms