RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 IL4P05112 153 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 P0C879 139 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 Q6ZS92 163 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 Q6ZWC4 215 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 RAB1CQ92928 201 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 RCHY1Q96PM5 261 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 SCNM1Q9BWG6 230 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 PIEZO1Q92508 2521 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 NOTCH2Q04721 2471 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 A0A1W2PPI3 338 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 HLA-DQA1P01909 254 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 ECSCRQ19T08 205 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 ETFRF1Q6IPR1 90 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 NUDT10Q8NFP7 164 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 PRSS3P2Q8NHM4 247 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 TMEM186Q96B77 213 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 NUDT11Q96G61 164 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 LOC102724200A0A096LPH7 203 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 TMEM178BH3BS89 294 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 TAS2R60P59551 318 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 TBR1Q16650 682 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 RNF151Q2KHN1 245 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 IGFL4Q6B9Z1 124 aa9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 CENPVQ7Z7K6 275 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 RBM14Q96PK6 669 aaKnown RBP9.84□□□□□ -0.83
CCDC88C-211ENST00000556726 TCF21O43680 179 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 CIARTQ8N365 385 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 MRPL36Q9P0J6 103 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 CDC42EP3Q9UKI2 254 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 TM4SF5O14894 197 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 FXYD7P58549 80 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 VAMP3Q15836 100 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 DMRTA1Q5VZB9 504 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 WFDC3Q8IUB2 231 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 SNHG12Q9BXW3 62 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 SORL1Q92673 2214 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 K7EQM0 130 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 ZNF207O43670 478 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 RPLP1P05386 114 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 CD99P14209 185 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 GRNP28799 593 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 MC5RP33032 325 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 HIF1ANQ9NWT6 349 aa9.83□□□□□ -0.84
CCDC88C-211ENST00000556726 SELENOTP62341 195 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 C11orf42Q8N5U0 333 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 OR8A1Q8NGG7 326 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 OR8B3Q8NGG8 313 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 Q9H3A6 140 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 FBXL7Q9UJT9 491 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 CCDC168Q8NDH2 2452 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 TCRBV4S1A1TA0A5B7 111 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 CSN1S1P47710 185 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 CLEC7AQ9BXN2 247 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 BET1LQ9NYM9 111 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 LSM4Q9Y4Z0 139 aaKnown RBP9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 C20orf202A1L168 122 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 CBY3A6NI87 242 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 ZNF785A8K8V0 405 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 M0R3E3 92 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 MAJINQ3KP22 176 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 C2orf83Q53S99 150 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 TMEM133Q9H2Q1 129 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 V9GYV3 84 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 MYO18BQ8IUG5 2567 aa9.82□□□□□ -0.84
CCDC88C-211ENST00000556726 E7EQL1 145 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 TIMM23O14925 209 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 MT-ND6P03923 174 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 IGHV1-8P0DP01 117 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 RPL15P61313 204 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 SLAQ13239 276 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 VWC2Q2TAL6 325 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PPP1R27Q86WC6 154 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 CTSZQ9UBR2 303 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 C2CD3Q4AC94 2353 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 CENPEQ02224 2701 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 A8MWL6 223 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PSG1P11464 419 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PRR20EP86478 221 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PRR20CP86479 221 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PRR20DP86480 221 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PRR20BP86481 221 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PRR20AP86496 221 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 FA2HQ7L5A8 372 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 PYGO2Q9BRQ0 406 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 AAMDCQ9H7C9 122 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 IGLV3-9A0A075B6K5 115 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 A0A1W2PRE2 83 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 KLHDC1Q8N7A1 406 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 NUP35Q8NFH5 326 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 EPDR1Q9UM22 224 aa9.81□□□□□ -0.84
CCDC88C-211ENST00000556726 POLQO75417 2590 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 FAM90A9PA6NNJ1 464 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 OR2J3O76001 311 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 ORM1P02763 201 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 EIF4EBP1Q13541 118 aaPredicted RBP9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 DDB2Q92466 427 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 WNK1Q9H4A3 2382 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 CACNG8Q8WXS5 425 aa9.8□□□□□ -0.84
CCDC88C-211ENST00000556726 UBTD1Q9HAC8 227 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms