RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF586Q9NXT0 402 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 PEX7O00628 323 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 SPATA45Q537H7 98 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 FAM169BQ8N8A8 192 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 CLEC5AQ9NY25 188 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 SSUH2Q9Y2M2 353 aa12.09□□□□□ -0.47
USP28-214ENST00000545540 HRNRQ86YZ3 2850 aaPredicted RBP12.09□□□□□ -0.47
USP28-214ENST00000545540 TMEM178BH3BS89 294 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 TMEM183BQ1AE95 376 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 ERASQ7Z444 233 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 OSR1Q8TAX0 266 aaPredicted RBP12.08□□□□□ -0.48
USP28-214ENST00000545540 OSTCQ9NRP0 149 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 IGLV2-23P01705 113 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 AMY1AP04745 511 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 Q8N976 141 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 A0A1W2PRE2 83 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 TEX43Q6ZNM6 134 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 FXYD5Q96DB9 178 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 RAB9BQ9NP90 201 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 VPS13CQ709C8 3753 aa12.08□□□□□ -0.48
USP28-214ENST00000545540 ITGB1BP1O14713 200 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 UBE2G1P62253 170 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 NIT1Q86X76 327 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 SPACA3Q8IXA5 215 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 PGLYRP4Q96LB8 373 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 MIEN1Q9BRT3 115 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 CEACAM4O75871 244 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 LOXP28300 417 aaPredicted RBP12.07□□□□□ -0.48
USP28-214ENST00000545540 LRRC10Q5BKY1 277 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 TEX36Q5VZQ5 186 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 C1orf174Q8IYL3 243 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 EXOC3-AS1Q8N2X6 119 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 FAM57AQ8TBR7 257 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 C18orf32Q8TCD1 76 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 ZNF324O75467 553 aaPredicted RBP12.07□□□□□ -0.48
USP28-214ENST00000545540 CEACAM8P31997 349 aaPredicted RBP12.07□□□□□ -0.48
USP28-214ENST00000545540 LYZP61626 148 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 Q0VG73 95 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 KLF17Q5JT82 389 aaPredicted RBP12.07□□□□□ -0.48
USP28-214ENST00000545540 CLEC7AQ9BXN2 247 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 FBXL15Q9H469 300 aa12.07□□□□□ -0.48
USP28-214ENST00000545540 SMIM27A0A1W2PRY6 76 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 TCRBV4S1A1TA0A5B7 111 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 GFRALQ6UXV0 394 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 KCNS1Q96KK3 526 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 TXN2Q99757 166 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 SPG11Q96JI7 2443 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 PRRG2O14669 202 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 PDPNQ86YL7 162 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 LINC01560Q8TB33 94 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 TMEM208Q9BTX3 173 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 WASHC3Q9Y3C0 194 aa12.06□□□□□ -0.48
USP28-214ENST00000545540 HSBP1O75506 76 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 TBR1Q16650 682 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 LINC00173Q6ZV60 143 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 C17orf77Q96MU5 243 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 TPPP3Q9BW30 176 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 MUC21A0A0G2JKD1 596 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 MUC21A0A140T8X8 626 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 GRNP28799 593 aaKnown RBP12.05□□□□□ -0.48
USP28-214ENST00000545540 TMEM177Q53S58 311 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 MUC21Q5SSG8 566 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 Q6ZN92 141 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 CIARTQ8N365 385 aaPredicted RBP12.05□□□□□ -0.48
USP28-214ENST00000545540 IGHV3OR16-8A0A075B7F1 116 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 IZUMO1RA6ND01 250 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 RBP4P02753 201 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 CSN3P07498 182 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 NBEAP1P0C6P0 100 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 RPL19P84098 196 aaKnown RBP12.05□□□□□ -0.48
USP28-214ENST00000545540 TMEM167AQ8TBQ9 72 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 RNASE6Q93091 150 aaKnown RBP12.05□□□□□ -0.48
USP28-214ENST00000545540 PMCHL2Q9BQD1 86 aa12.05□□□□□ -0.48
USP28-214ENST00000545540 PLGLAQ15195 96 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 MRGPRG-AS1Q2M3A8 158 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 BORCS7Q96B45 105 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 LY96Q9Y6Y9 160 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 E7EQL1 145 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 M0R2Z0 102 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 HINT1P49773 126 aaPredicted RBP12.04□□□□□ -0.48
USP28-214ENST00000545540 LBHQ53QV2 105 aaPredicted RBP12.04□□□□□ -0.48
USP28-214ENST00000545540 WDR73Q6P4I2 378 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 SPATA12Q7Z6I5 190 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 BCL6BQ8N143 479 aaPredicted RBP12.04□□□□□ -0.48
USP28-214ENST00000545540 TCTAP57738 103 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 EBLN2Q6P2I7 272 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 CACNG8Q8WXS5 425 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 EPDR1Q9UM22 224 aa12.04□□□□□ -0.48
USP28-214ENST00000545540 IGLC7A0M8Q6 106 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 RPLP1P05386 114 aaKnown RBP12.03□□□□□ -0.48
USP28-214ENST00000545540 IGHV1-8P0DP01 117 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 HILPDAQ9Y5L2 63 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 FSTL3O95633 263 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 HLA-DQA1P01909 254 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 CRYABP02511 175 aaKnown RBP12.03□□□□□ -0.48
USP28-214ENST00000545540 LINC00574Q9H8X3 128 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 LPAR2Q9HBW0 351 aa12.03□□□□□ -0.48
USP28-214ENST00000545540 BPIFB3P59826 476 aa12.02□□□□□ -0.48
USP28-214ENST00000545540 VMA21Q3ZAQ7 101 aa12.02□□□□□ -0.48
USP28-214ENST00000545540 C11orf42Q8N5U0 333 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms