RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 DUXBA0A1W2PPF3 345 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 KNCNA6PVL3 124 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 ZNF705EA8MWA4 302 aaPredicted RBP9.55□□□□□ -0.88
RTN3-212ENST00000543123 FAM90A26D6RGX4 464 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 DEFB4AO15263 64 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 KLF9Q13886 244 aaPredicted RBP9.55□□□□□ -0.88
RTN3-212ENST00000543123 USF2Q15853 346 aaPredicted RBP9.55□□□□□ -0.88
RTN3-212ENST00000543123 OR8G2PQ6IF36 304 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 OR51G1Q8NGK1 321 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 OR1S1Q8NH92 325 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 TMEM170AQ8WVE7 144 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 RNF125Q96EQ8 232 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 SLC35E1Q96K37 410 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 RAB40CQ96S21 281 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 TBC1D24Q9ULP9 559 aa9.55□□□□□ -0.88
RTN3-212ENST00000543123 ZFP92A6NM28 416 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 BUB3O43684 328 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 PSG1P11464 419 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 C4BPBP20851 252 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 GPX4P36969 197 aaPredicted RBP9.54□□□□□ -0.88
RTN3-212ENST00000543123 RAB11AP62491 216 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 LYZL2Q7Z4W2 148 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 MCFD2Q8NI22 146 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 SLIRPQ9GZT3 109 aaKnown RBP9.54□□□□□ -0.88
RTN3-212ENST00000543123 RBKSQ9H477 322 aa9.54□□□□□ -0.88
RTN3-212ENST00000543123 H3BMQ9 156 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 GIG44P09565 113 aaPredicted RBP9.53□□□□□ -0.88
RTN3-212ENST00000543123 TNFSF8P32971 234 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 SUPT4H1P63272 117 aaKnown RBP9.53□□□□□ -0.88
RTN3-212ENST00000543123 TMEM128Q5BJH2 165 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 SAMD13Q5VXD3 122 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 RPP25LQ8N5L8 163 aaKnown RBP9.53□□□□□ -0.88
RTN3-212ENST00000543123 DEDD2Q8WXF8 326 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 PBDC1Q9BVG4 233 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 PRR13Q9NZ81 148 aa9.53□□□□□ -0.88
RTN3-212ENST00000543123 TRAV10A0A0B4J240 114 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 IGLL5B9A064 214 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 MED6O75586 246 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 DEDDO75618 318 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 ID1P41134 155 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 NKX2-1P43699 371 aaPredicted RBP9.52□□□□□ -0.89
RTN3-212ENST00000543123 RPP30P78346 268 aaKnown RBP9.52□□□□□ -0.89
RTN3-212ENST00000543123 C1orf194Q5T5A4 169 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 TMED4Q7Z7H5 227 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 TOMM5Q8N4H5 51 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 SOSTQ9BQB4 213 aa9.52□□□□□ -0.89
RTN3-212ENST00000543123 RBMY1A1P0DJD3 496 aaKnown RBP9.51□□□□□ -0.89
RTN3-212ENST00000543123 RBMY1CP0DJD4 496 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 SLC25A6P12236 298 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 HLA-DRB4P13762 266 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 VAMP1P23763 118 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 HLA-DMBP28068 263 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 S100A5P33763 92 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 GAMTQ14353 236 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 RBMY1FQ15415 496 aaKnown RBP9.51□□□□□ -0.89
RTN3-212ENST00000543123 PYDC2Q56P42 97 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 CSNK1G2-AS1Q8NCQ2 148 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 PPP1R14BQ96C90 147 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 CIB3Q96Q77 187 aaPredicted RBP9.51□□□□□ -0.89
RTN3-212ENST00000543123 SLC25A21Q9BQT8 299 aaPredicted RBP9.51□□□□□ -0.89
RTN3-212ENST00000543123 CLEC5AQ9NY25 188 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 HLA-DRB4X5D2U9 266 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 X6R8D5 127 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 AGRNO00468 2067 aa9.51□□□□□ -0.89
RTN3-212ENST00000543123 SNRPGP15A8MWD9 76 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 H3BMM0 161 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 CFDP00746 253 aaPredicted RBP9.5□□□□□ -0.89
RTN3-212ENST00000543123 S100A7P31151 101 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 PSMB3P49720 205 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 SPATA31B1PQ5VZV4 182 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 Q6ZTC4 211 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 LRTM2Q8N967 370 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 COQ8AQ8NI60 647 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 XCL2Q9UBD3 114 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 TMED3Q9Y3Q3 217 aa9.5□□□□□ -0.89
RTN3-212ENST00000543123 TMEM189A5PLL7 270 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 MEOX2P50222 304 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 LYZP61626 148 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 FOXI2Q6ZQN5 318 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 TRIM63Q969Q1 353 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 TRGV9Q99603 122 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 RNF126Q9BV68 326 aa9.49□□□□□ -0.89
RTN3-212ENST00000543123 PAIP2BQ9ULR5 123 aaKnown RBP9.49□□□□□ -0.89
RTN3-212ENST00000543123 HECTD4Q9Y4D8 3996 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 VPS13DQ5THJ4 4388 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 ELOA3CA0A087WX78 387 aaPredicted RBP9.48□□□□□ -0.89
RTN3-212ENST00000543123 ISLRO14498 428 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 PITX3O75364 302 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 ZNF90Q03938 601 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 GGNBP1Q5YKI7 109 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 OR8I2Q8N0Y5 310 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 LINC00052Q96N35 136 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 CLUHP3Q96NS8 147 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 APLNQ9ULZ1 77 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 SLC45A2Q9UMX9 530 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 DNAH6Q9C0G6 4158 aa9.48□□□□□ -0.89
RTN3-212ENST00000543123 IGHV4-4A0A075B6R2 117 aa9.47□□□□□ -0.89
RTN3-212ENST00000543123 IGKV1D-37A0A075B6S9 117 aa9.47□□□□□ -0.89
RTN3-212ENST00000543123 TEX48A0A1B0GUV7 120 aa9.47□□□□□ -0.89
RTN3-212ENST00000543123 CCDC160A6NGH7 325 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms