RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ATP5SQ99766 215 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 GINS3Q9BRX5 216 aa13.04□□□□□ -0.32
LIG1-204ENST00000542460 IGHV3OR16-8A0A075B7F1 116 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 TMEM213A2RRL7 107 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 RNF222A6NCQ9 220 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 C2orf70A6NJV1 201 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 SEC14L6B5MCN3 397 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 ARPC5O15511 151 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 CFDP00746 253 aaPredicted RBP13.03□□□□□ -0.32
LIG1-204ENST00000542460 CSN3P07498 182 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 BTNL8Q6UX41 500 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 IL34Q6ZMJ4 242 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 CYP2G1PQ6ZSU1 146 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 OR11H4Q8NGC9 324 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 SMIM3Q9BZL3 60 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 AGPAT2O15120 278 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 MPDU1O75352 247 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 SAP30O75446 220 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 IL4P05112 153 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 IGLL1P15814 213 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 CAMLGP49069 296 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 INSL3P51460 131 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 AP2S1P53680 142 aaPredicted RBP13.03□□□□□ -0.32
LIG1-204ENST00000542460 OR2F1Q13607 317 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 C9orf66Q5T8R8 295 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 BPIFCQ8NFQ6 507 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 MARC2Q969Z3 335 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 MGST2Q99735 147 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 MFFQ9GZY8 342 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 SIGLEC8Q9NYZ4 499 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 MRPL27Q9P0M9 148 aaKnown RBP13.03□□□□□ -0.32
LIG1-204ENST00000542460 FBXL17Q9UF56 701 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 PKD1L1Q8TDX9 2849 aa13.03□□□□□ -0.32
LIG1-204ENST00000542460 WI2-2373I1.2A0A1W2PRP0 233 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 IFNA5P01569 189 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 FOLR2P14207 255 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 FGF7P21781 194 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 CBLN1P23435 193 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 RNF125Q96EQ8 232 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 GPR61Q9BZJ8 451 aa13.02□□□□□ -0.33
LIG1-204ENST00000542460 ZNF207O43670 478 aaKnown RBP13.01□□□□□ -0.33
LIG1-204ENST00000542460 C1QBP02746 253 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 C8orf88P0DMB2 117 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 NPPCP23582 126 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 GATA2P23769 480 aaPredicted RBP13.01□□□□□ -0.33
LIG1-204ENST00000542460 TMEM182Q6ZP80 229 aaPredicted RBP13.01□□□□□ -0.33
LIG1-204ENST00000542460 METTL26Q96S19 204 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 WDR61Q9GZS3 305 aaKnown RBP13.01□□□□□ -0.33
LIG1-204ENST00000542460 WFDC1Q9HC57 220 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 SLC45A2Q9UMX9 530 aa13.01□□□□□ -0.33
LIG1-204ENST00000542460 USF2Q15853 346 aaPredicted RBP13□□□□□ -0.33
LIG1-204ENST00000542460 ZFP69Q49AA0 526 aa13□□□□□ -0.33
LIG1-204ENST00000542460 ADAMTSL5Q6ZMM2 481 aa13□□□□□ -0.33
LIG1-204ENST00000542460 PBDC1Q9BVG4 233 aa13□□□□□ -0.33
LIG1-204ENST00000542460 IGHV7-4-1A0A0J9YVY3 117 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 EDN2P20800 178 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 CRYBB3P26998 211 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 LYZP61626 148 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 ZNF266Q14584 549 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 ZNF345Q14585 488 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 SCGB1C1Q8TD33 95 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 GGTLC1Q9BX51 225 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 NPCDR1Q9BY65 106 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 PARD6GQ9BYG4 376 aaPredicted RBP12.99□□□□□ -0.33
LIG1-204ENST00000542460 SMPXQ9UHP9 88 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 RABAC1Q9UI14 185 aa12.99□□□□□ -0.33
LIG1-204ENST00000542460 TAAR5O14804 337 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 WIPF1O43516 503 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 LINC00869P0C866 280 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 RPL29P47914 159 aaKnown RBP12.98□□□□□ -0.33
LIG1-204ENST00000542460 OXLD1Q5BKU9 147 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 ZNF709Q8N972 641 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 HYLS1Q96M11 299 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 TECRQ9NZ01 308 aaKnown RBP12.98□□□□□ -0.33
LIG1-204ENST00000542460 MGAM2Q2M2H8 2515 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 A0A0D9SG52 128 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 ORM2P19652 201 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 BMI1P35226 326 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 NKX2-5P52952 324 aaPredicted RBP12.98□□□□□ -0.33
LIG1-204ENST00000542460 PLP1P60201 277 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PRR20EP86478 221 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PRR20CP86479 221 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PRR20DP86480 221 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PRR20BP86481 221 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PRR20AP86496 221 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 OPCMLQ14982 345 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PXDC1Q5TGL8 231 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 KCNRGQ8N5I3 272 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 STPG3Q8N7X2 389 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 DYNLRB2Q8TF09 96 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 NARS2Q96I59 477 aaKnown RBP12.98□□□□□ -0.33
LIG1-204ENST00000542460 RHPN1-AS1Q9BWJ2 59 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 PFDN2Q9UHV9 154 aa12.98□□□□□ -0.33
LIG1-204ENST00000542460 A0A1W2PS18 150 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 C17orf112F2Z3M2 114 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 CHEK1O14757 476 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 IGLV1-51P01701 117 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 MIC13Q5XKP0 118 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 Q6ZRG5 221 aa12.97□□□□□ -0.33
LIG1-204ENST00000542460 OR1B1Q8NGR6 318 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms