RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 FHL1Q13642 323 aa12.35□□□□□ -0.43
SMARCA4-207ENST00000541122 FAM201AQ5SY85 155 aa12.35□□□□□ -0.43
SMARCA4-207ENST00000541122 NAA38Q9BRA0 125 aaKnown RBP12.35□□□□□ -0.43
SMARCA4-207ENST00000541122 IGHV3OR16-13A0A075B7E8 117 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 IGHV3-74A0A0B4J1X5 117 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 PSMB11A5LHX3 300 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 NPSP0C0P6 89 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 LYPD1Q8N2G4 141 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 TMEM133Q9H2Q1 129 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 FAM231BA6NCW3 169 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 C17orf100A8MU93 164 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 LILRA1O75019 489 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 TOMM40O96008 361 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 IGHV3-23P01764 117 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 CD33P20138 364 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 NTF4P34130 210 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 CDKN1AP38936 164 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 TMEM249Q2WGJ8 235 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 FOXL2NBQ6ZUU3 175 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 RPUSD1Q9UJJ7 312 aaKnown RBP12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 SPAARA0A1B0GVQ0 90 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 ADAMTSL5Q6ZMM2 481 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 NUP37Q8NFH4 326 aa12.34□□□□□ -0.43
SMARCA4-207ENST00000541122 GFRA3O60609 400 aa12.33□□□□□ -0.43
SMARCA4-207ENST00000541122 RNASE4P34096 147 aaKnown RBP12.33□□□□□ -0.43
SMARCA4-207ENST00000541122 UCNP55089 124 aa12.33□□□□□ -0.43
SMARCA4-207ENST00000541122 SRSF6Q13247 344 aaKnown RBP12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 FREM3P0C091 2139 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 EVI2AP22794 236 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 FGFBP3Q8TAT2 258 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 PLEKHB2Q96CS7 222 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 VWCEQ96DN2 955 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 S4R3C0 116 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 CLPSP04118 112 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 CT83Q5H943 113 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 CHAC1Q9BUX1 264 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 DNAJC13O75165 2243 aa12.33□□□□□ -0.44
SMARCA4-207ENST00000541122 SRRM5B3KS81 715 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 PSG3Q16557 428 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 C18orf32Q8TCD1 76 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 SLC25A15Q9Y619 301 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 A0A0G2JRQ6 117 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 A0A1B0GWJ7 208 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 LYZL1Q6UWQ5 148 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 BMPERQ8N8U9 685 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 TMEM167AQ8TBQ9 72 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 ZNF492Q9P255 531 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 TPRP12270 2363 aaKnown RBP12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 M0R2P5 195 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 SPINK8P0C7L1 97 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 DMRTC2Q8IXT2 367 aaPredicted RBP12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 DMRTA2Q96SC8 542 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 IGHV3-66A0A0C4DH42 116 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 CCL3L1P16619 93 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 FAM186AA6NE01 2351 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 ANK1P16157 1881 aa12.32□□□□□ -0.44
SMARCA4-207ENST00000541122 C9orf118A6NHY6 69 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 OVOL1O14753 267 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 PIMREGQ9BSJ6 248 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 CLEC19AQ6UXS0 136 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 TEX43Q6ZNM6 134 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 IGHV3OR16-12A0A075B7B8 117 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 IGHV3-49A0A0A0MS15 119 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 CD300EQ496F6 205 aaPredicted RBP12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 Q6P435 159 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 Q6ZWC4 215 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 FAM57AQ8TBR7 257 aa12.31□□□□□ -0.44
SMARCA4-207ENST00000541122 RNF144BQ7Z419 303 aa12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 NEU4Q8WWR8 484 aaPredicted RBP12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 C11orf68Q9H3H3 251 aaKnown RBP12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 Q6ZRM9 215 aa12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 ZNF329Q86UD4 541 aa12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 LIME1Q9H400 295 aa12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 LYPD6BQ8NI32 183 aa12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 TDRD6O60522 2096 aaKnown RBP12.3□□□□□ -0.44
SMARCA4-207ENST00000541122 RNF5Q99942 180 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 ZNF883P0CG24 379 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 ZC2HC1BQ5TFG8 222 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 PSPNO60542 156 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 NCR2O95944 276 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 PRTN3P24158 256 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 GGNQ86UU5 652 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 SPANXDQ9BXN6 97 aa12.29□□□□□ -0.44
SMARCA4-207ENST00000541122 MORN3Q6PF18 240 aaPredicted RBP12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 IGHV2-26A0A0B4J1V2 119 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 NPIPB5A8MRT5 1133 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 PGPEP1Q9NXJ5 209 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 PMS2P5A8MQ11 134 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 DUSP14O95147 198 aaKnown RBP12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 IGKV3-20P01619 116 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 DUX3Q96PT4 197 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 K7EP34 96 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 CD7P09564 240 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 CD28P10747 220 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 TMEM155Q4W5P6 130 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 ZNF562Q6V9R5 426 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 Q86TA4 180 aa12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 MBNL3Q9NUK0 354 aaKnown RBP12.28□□□□□ -0.44
SMARCA4-207ENST00000541122 PDLIM4P50479 330 aa12.27□□□□□ -0.44
SMARCA4-207ENST00000541122 FAM231DQ6ZW35 169 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms