RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ACTL10Q5JWF8 245 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 MINOS1Q5TGZ0 78 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 PVRIGQ6DKI7 326 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GOLT1AQ6ZVE7 132 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GBGT1Q8N5D6 347 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 GSX1Q9H4S2 264 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-213ENST00000540338 MINOS1-NBL1R4GNA1 71 aa8.66□□□□□ -1.02
CLIP1-213ENST00000540338 INS-IGF2F8WCM5 200 aa8.65□□□□□ -1.02
CLIP1-213ENST00000540338 LHFPL4Q7Z7J7 247 aa8.65□□□□□ -1.02
CLIP1-213ENST00000540338 ATG101Q9BSB4 218 aa8.65□□□□□ -1.02
CLIP1-213ENST00000540338 IGLC7A0M8Q6 106 aa8.65□□□□□ -1.02
CLIP1-213ENST00000540338 GNLYP22749 145 aa8.65□□□□□ -1.02
CLIP1-213ENST00000540338 NOL4LQ96MY1 436 aaPredicted RBP8.65□□□□□ -1.02
CLIP1-213ENST00000540338 THAP8Q8NA92 274 aa8.65□□□□□ -1.03
CLIP1-213ENST00000540338 RITA1Q96K30 269 aa8.65□□□□□ -1.03
CLIP1-213ENST00000540338 PIMREGQ9BSJ6 248 aa8.65□□□□□ -1.03
CLIP1-213ENST00000540338 IGKV1OR2-108A0A075B7D4 117 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 GGTLC3B5MD39 225 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 IGLV1-47P01700 117 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 IGLV2-23P01705 113 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 TYMSP04818 313 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 RPL7P18124 248 aaKnown RBP8.64□□□□□ -1.03
CLIP1-213ENST00000540338 ADMP35318 185 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 ZNF705AQ6ZN79 300 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-213ENST00000540338 FMC1Q96HJ9 113 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 PYGO2Q9BRQ0 406 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 SLC25A2Q9BXI2 301 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 OTORQ9NRC9 128 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 E7EUB6 86 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 DLX6P56179 175 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 RNASEKQ6P5S7 137 aaKnown RBP8.64□□□□□ -1.03
CLIP1-213ENST00000540338 RNF125Q96EQ8 232 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 FBXL7Q9UJT9 491 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 BMPR1BO00238 502 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 HCFC1P51610 2035 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 IZUMO1RA6ND01 250 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 SRIP30626 198 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 CX3CL1P78423 397 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 PYY3Q5JQD4 70 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 ZNF600Q6ZNG1 722 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 TMEM116Q8NCL8 245 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 HSPB9Q9BQS6 159 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 RABAC1Q9UI14 185 aa8.64□□□□□ -1.03
CLIP1-213ENST00000540338 DSCAMO60469 2012 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 VPS13AQ96RL7 3174 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 SERTM2A0A1B0GWG4 89 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 C20orf202A1L168 122 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 ATP5J2P56134 94 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 SSBP2P81877 361 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-213ENST00000540338 KLF17Q5JT82 389 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-213ENST00000540338 SLC25A39Q9BZJ4 359 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-213ENST00000540338 AMBPP02760 352 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 RPL11P62913 178 aaKnown RBP8.63□□□□□ -1.03
CLIP1-213ENST00000540338 C19orf35Q6ZS72 473 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 GNB1LQ9BYB4 327 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 SPEGQ15772 3267 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 IGHV3-23P01764 117 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 ZNF329Q86UD4 541 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 LINC00479Q96M42 142 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 VAMP8Q9BV40 100 aa8.63□□□□□ -1.03
CLIP1-213ENST00000540338 HLA-DRB1P01911 266 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 RIGQ13278 110 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 CCL19Q99731 98 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 HSBP1L1C9JCN9 74 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 PSG9Q00887 426 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 FAM168AQ92567 244 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 IGHV3-35A0A0C4DH35 117 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 LINC00587B1AMM8 73 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 CA1P00915 261 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-213ENST00000540338 SP5Q6BEB4 398 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-213ENST00000540338 ZNF562Q6V9R5 426 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 PGLYRP4Q96LB8 373 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 YPEL4Q96NS1 127 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 NAGKQ9UJ70 344 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 Q8N7P7 452 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 NUDT10Q8NFP7 164 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 OR11H6Q8NGC7 330 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 NUDT11Q96G61 164 aa8.62□□□□□ -1.03
CLIP1-213ENST00000540338 RPP21Q9H633 154 aaKnown RBP8.62□□□□□ -1.03
CLIP1-213ENST00000540338 PTPRBP23467 1997 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 IGHV3OR16-10A0A075B7F0 116 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 JOSD1Q15040 202 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-213ENST00000540338 ZNF841Q6ZN19 808 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 SMIM15Q7Z3B0 74 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 TBX15Q96SF7 602 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 TMEM183BQ1AE95 376 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 ANKRD11Q6UB99 2663 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-213ENST00000540338 TRBV20OR9-2A0A075B6H5 130 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 HIGD1CA8MV81 97 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 TNFRSF13BO14836 293 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-213ENST00000540338 BPESC1Q9GZL8 116 aa8.61□□□□□ -1.03
CLIP1-213ENST00000540338 OR2T8A6NH00 312 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 FSTL3O95633 263 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 TCRAP04437 139 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 BATFQ16520 125 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 C1orf122Q6ZSJ8 110 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 TBL2Q9Y4P3 447 aaKnown RBP8.6□□□□□ -1.03
CLIP1-213ENST00000540338 ATRXP46100 2492 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 M0R2Z0 102 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 RAB9AP51151 201 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms