RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SELENOHQ8IZQ5 122 aaKnown RBP9.67□□□□□ -0.86
SS18-204ENST00000539244 C15orf40Q8WUR7 153 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 GPR146Q96CH1 333 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 SAV1Q9H4B6 383 aaPredicted RBP9.67□□□□□ -0.86
SS18-204ENST00000539244 NAA60Q9H7X0 242 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 DKK2Q9UBU2 259 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 CACNG5Q9UF02 275 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 RFNGQ9Y644 331 aa9.67□□□□□ -0.86
SS18-204ENST00000539244 CEBPZOSA8MTT3 80 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 RAB3DO95716 219 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 PSG1P11464 419 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 SURF2Q15527 256 aaPredicted RBP9.66□□□□□ -0.86
SS18-204ENST00000539244 RNF212Q495C1 297 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 SCGB2B2Q4G0G5 96 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 NMSQ5H8A3 153 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 FOXI2Q6ZQN5 318 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 ZNF709Q8N972 641 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 RNF125Q96EQ8 232 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 RTBDNQ9BSG5 229 aaPredicted RBP9.66□□□□□ -0.86
SS18-204ENST00000539244 EXTL2Q9UBQ6 330 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 TMEM56-RWDD3S4R434 201 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 NACAE9PAV3 2078 aa9.66□□□□□ -0.86
SS18-204ENST00000539244 SOCS3O14543 225 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 TNFAIP8O95379 198 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 PSMB3P49720 205 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 SSBP1Q04837 148 aaKnown RBP9.65□□□□□ -0.86
SS18-204ENST00000539244 ZNF79Q15937 498 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 GPR107Q5VW38 600 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 SPATA31B1PQ5VZV4 182 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 OR8G2PQ6IF36 304 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 STEAP1BQ6NZ63 245 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 UBE2DNLQ8IWF7 75 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 OR51G1Q8NGK1 321 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 AP3S1Q92572 193 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 ACY3Q96HD9 319 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 NIPSNAP3BQ9BS92 247 aa9.65□□□□□ -0.86
SS18-204ENST00000539244 C14orf166Q9Y224 244 aaKnown RBP9.65□□□□□ -0.86
SS18-204ENST00000539244 IGLV2-18A0A075B6J9 118 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 CRYM-AS1A6NIL9 109 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 GABARAPH6UMI1 98 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 GABARAPO95166 117 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 EMP1P54849 157 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 PAX9P55771 341 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 MEF2DQ14814 521 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 SOHLH1Q5JUK2 328 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 FAM222AQ5U5X8 452 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 TMEM268Q5VZI3 342 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 IL22RA2Q969J5 263 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 WDR12Q9GZL7 423 aaKnown RBP9.64□□□□□ -0.87
SS18-204ENST00000539244 PFDN2Q9UHV9 154 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 U3KQ87 197 aa9.64□□□□□ -0.87
SS18-204ENST00000539244 IGHV3OR16-12A0A075B7B8 117 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 SULT1A3P0DMM9 295 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 SULT1A4P0DMN0 295 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 ZNF182P17025 639 aaPredicted RBP9.63□□□□□ -0.87
SS18-204ENST00000539244 ID1P41134 155 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 FXYD7P58549 80 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 DEFB1P60022 68 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 SUPT4H1P63272 117 aaKnown RBP9.63□□□□□ -0.87
SS18-204ENST00000539244 C1orf194Q5T5A4 169 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 GPR132Q9UNW8 380 aa9.63□□□□□ -0.87
SS18-204ENST00000539244 IGKV1D-37A0A075B6S9 117 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 ISLRO14498 428 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 IGKV3-20P01619 116 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 ATP5IP56385 69 aaPredicted RBP9.62□□□□□ -0.87
SS18-204ENST00000539244 MRPS10P82664 201 aaKnown RBP9.62□□□□□ -0.87
SS18-204ENST00000539244 KLF9Q13886 244 aaPredicted RBP9.62□□□□□ -0.87
SS18-204ENST00000539244 CTF1Q16619 201 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 C1orf134Q5TEV5 83 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 FAAP20Q6NZ36 180 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 ZNF575Q86XF7 245 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 C1orf158Q8N1D5 194 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 LINC00052Q96N35 136 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 KRTAP4-5Q9BYR2 181 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 SLC35B3Q9H1N7 401 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 HSPB7Q9UBY9 170 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 GOLT1BQ9Y3E0 138 aa9.62□□□□□ -0.87
SS18-204ENST00000539244 A8MTW9 85 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 HBE1P02100 147 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 GPX4P36969 197 aaPredicted RBP9.61□□□□□ -0.87
SS18-204ENST00000539244 FAM3BP58499 235 aaPredicted RBP9.61□□□□□ -0.87
SS18-204ENST00000539244 PSG9Q00887 426 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 GAMTQ14353 236 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 SAMD13Q5VXD3 122 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 LGI3Q8N145 548 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 OR4B1Q8NGF8 309 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 COQ8AQ8NI60 647 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 DTD1Q8TEA8 209 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 PBDC1Q9BVG4 233 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 PLA2G2EQ9NZK7 142 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 YTHDF2Q9Y5A9 579 aaKnown RBP9.61□□□□□ -0.87
SS18-204ENST00000539244 ABCA13Q86UQ4 5058 aa9.61□□□□□ -0.87
SS18-204ENST00000539244 A0A0J9YX75 114 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 LOC102723971A0A1B0GUV8 181 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 ZFP92A6NM28 416 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 DISC1C4P0D8 188 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 CCR6P51684 374 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 ZNF90Q03938 601 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 FAM78BQ5VT40 261 aa9.6□□□□□ -0.87
SS18-204ENST00000539244 TMEM88Q6PEY1 159 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms