RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NDUFS6O75380 124 aaKnown RBP9.42□□□□□ -0.9
CLIP1-208ENST00000537004 LINC00869P0C866 280 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 KRTAP10-3P60369 221 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 GNB1P62873 340 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 CFHR4Q92496 578 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 MALSU1Q96EH3 234 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 SLC35E1Q96K37 410 aa9.42□□□□□ -0.9
CLIP1-208ENST00000537004 PAGE4O60829 102 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 CLN5O75503 358 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 NDUFA7O95182 113 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 RHOBP62745 196 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 TMEM219Q86XT9 240 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 OR5R1Q8NH85 324 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 OR2T6Q8NHC8 308 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 ABHD5Q8WTS1 349 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 WFDC12Q8WWY7 111 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 TVP23CQ96ET8 276 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 FNDC4Q9H6D8 234 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-208ENST00000537004 RNF114Q9Y508 228 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 CLPSL1A2RUU4 121 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 AP4M1O00189 453 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 STAG3L2P0CL84 134 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 STAG3L3P0CL85 134 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 ARL14EPLP0DKL9 152 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 APELAP0DMC3 54 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 AREGP15514 252 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 OR10J1P30954 320 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 PLGLAQ15195 96 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 MMDQ15546 238 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 HIST2H2BDQ6DRA6 164 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 SHISA2Q6UWI4 295 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 ZNF114Q8NC26 417 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 ACY3Q96HD9 319 aa9.41□□□□□ -0.9
CLIP1-208ENST00000537004 SEPSECSQ9HD40 501 aaKnown RBP9.41□□□□□ -0.9
CLIP1-208ENST00000537004 CMYA5Q8N3K9 4069 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 FCN1O00602 326 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 CXorf1O96002 111 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 MOSP00540 346 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 CD24P25063 80 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 SSBP2P81877 361 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-208ENST00000537004 OR4F4Q96R69 305 aa9.4□□□□□ -0.9
CLIP1-208ENST00000537004 TBL2Q9Y4P3 447 aaKnown RBP9.4□□□□□ -0.9
CLIP1-208ENST00000537004 TEX22C9J3V5 150 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 TMEM250H0YL14 139 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 NBR2O15453 112 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 RAB5AP20339 215 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 GATA2P23769 480 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-208ENST00000537004 RPL15P61313 204 aaKnown RBP9.39□□□□□ -0.91
CLIP1-208ENST00000537004 FBLN7Q53RD9 439 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 SPATA31B1PQ5VZV4 182 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 CCDC144NLQ6NUI1 221 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 SRSF12Q8WXF0 261 aaKnown RBP9.39□□□□□ -0.91
CLIP1-208ENST00000537004 OOSP1A8MZH6 123 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 C11orf94C9JXX5 98 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 IGHV3-48P01763 117 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 MFAP2P55001 183 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 PROK1P58294 105 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 UBE2G2P60604 165 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 MINOS1Q5TGZ0 78 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 PVRIGQ6DKI7 326 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 C1QL4Q86Z23 238 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 MISP3Q96FF7 219 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 EAF1Q96JC9 268 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-208ENST00000537004 MINOS1-NBL1R4GNA1 71 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 NOTCH1P46531 2555 aa9.39□□□□□ -0.91
CLIP1-208ENST00000537004 ZNF727A8MUV8 499 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 DEFA6Q01524 100 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 HES1Q14469 280 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 FAM78BQ5VT40 261 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 ETFRF1Q6IPR1 90 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 C19orf35Q6ZS72 473 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 NPBQ8NG41 125 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 OR1P1Q8NH06 330 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 NPIPB3Q92617 1050 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 ISOC2Q96AB3 205 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 PFDN5Q99471 154 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 SMIM7Q9BQ49 75 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 MRPL36Q9P0J6 103 aaKnown RBP9.38□□□□□ -0.91
CLIP1-208ENST00000537004 A0A087WWC5 75 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 A0A1B0GUS0 222 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 NDUFA3O95167 84 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 CNIH1O95406 144 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 MT-CO2P00403 227 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 PNRC1Q12796 327 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-208ENST00000537004 ZNF674Q2M3X9 581 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 CST9LP1Q5W188 147 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 CYP2G1PQ6ZSU1 146 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 MIR17HGQ75NE6 70 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 OR2T10Q8NGZ9 312 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 RPUSD4Q96CM3 377 aaKnown RBP9.38□□□□□ -0.91
CLIP1-208ENST00000537004 SDF2L1Q9HCN8 221 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 FUT9Q9Y231 359 aa9.38□□□□□ -0.91
CLIP1-208ENST00000537004 B4DEV8 164 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 CRYGCP07315 174 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 GCHFRP30047 84 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 RND2P52198 227 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 Q6ZS46 218 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 THAP8Q8NA92 274 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 SGMS2Q8NHU3 365 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 CITED1Q99966 193 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms