RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 PSMG4Q5JS54 123 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 ACTL10Q5JWF8 245 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 C16orf54Q6UWD8 224 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 LGI3Q8N145 548 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 Q8NAQ8 132 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 DTD1Q8TEA8 209 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 NPIPB3Q92617 1050 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 C1QTNF4Q9BXJ3 329 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 NRN1Q9NPD7 142 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 HSPB7Q9UBY9 170 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 FRAS1Q86XX4 4008 aa9.57□□□□□ -0.88
RTN3-207ENST00000536011 FABP12A6NFH5 140 aa9.56□□□□□ -0.88
RTN3-207ENST00000536011 NXPH3O95157 252 aa9.56□□□□□ -0.88
RTN3-207ENST00000536011 AKR1C4P17516 323 aa9.56□□□□□ -0.88
RTN3-207ENST00000536011 SIGLEC15Q6ZMC9 328 aa9.56□□□□□ -0.88
RTN3-207ENST00000536011 IGHV4-28A0A0C4DH34 117 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 DUXBA0A1W2PPF3 345 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 KNCNA6PVL3 124 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 ZNF705EA8MWA4 302 aaPredicted RBP9.55□□□□□ -0.88
RTN3-207ENST00000536011 FAM90A26D6RGX4 464 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 DEFB4AO15263 64 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 LORP23490 312 aaPredicted RBP9.55□□□□□ -0.88
RTN3-207ENST00000536011 KLF9Q13886 244 aaPredicted RBP9.55□□□□□ -0.88
RTN3-207ENST00000536011 USF2Q15853 346 aaPredicted RBP9.55□□□□□ -0.88
RTN3-207ENST00000536011 OR8G2PQ6IF36 304 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 OR51G1Q8NGK1 321 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 OR1S1Q8NH92 325 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 TMEM170AQ8WVE7 144 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 RNF125Q96EQ8 232 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 SLC35E1Q96K37 410 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 RAB40CQ96S21 281 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 TBC1D24Q9ULP9 559 aa9.55□□□□□ -0.88
RTN3-207ENST00000536011 ZFP92A6NM28 416 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 BUB3O43684 328 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 PSG1P11464 419 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 C4BPBP20851 252 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 GPX4P36969 197 aaPredicted RBP9.54□□□□□ -0.88
RTN3-207ENST00000536011 RAB11AP62491 216 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 LYZL2Q7Z4W2 148 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 MCFD2Q8NI22 146 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 SLIRPQ9GZT3 109 aaKnown RBP9.54□□□□□ -0.88
RTN3-207ENST00000536011 RBKSQ9H477 322 aa9.54□□□□□ -0.88
RTN3-207ENST00000536011 H3BMQ9 156 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 GIG44P09565 113 aaPredicted RBP9.53□□□□□ -0.88
RTN3-207ENST00000536011 TNFSF8P32971 234 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 SUPT4H1P63272 117 aaKnown RBP9.53□□□□□ -0.88
RTN3-207ENST00000536011 TMEM128Q5BJH2 165 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 SAMD13Q5VXD3 122 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 RPP25LQ8N5L8 163 aaKnown RBP9.53□□□□□ -0.88
RTN3-207ENST00000536011 DEDD2Q8WXF8 326 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 PBDC1Q9BVG4 233 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 PRR13Q9NZ81 148 aa9.53□□□□□ -0.88
RTN3-207ENST00000536011 TRAV10A0A0B4J240 114 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 IGLL5B9A064 214 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 MED6O75586 246 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 DEDDO75618 318 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 ID1P41134 155 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 NKX2-1P43699 371 aaPredicted RBP9.52□□□□□ -0.89
RTN3-207ENST00000536011 RPP30P78346 268 aaKnown RBP9.52□□□□□ -0.89
RTN3-207ENST00000536011 C1orf194Q5T5A4 169 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 TMED4Q7Z7H5 227 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 TOMM5Q8N4H5 51 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 SOSTQ9BQB4 213 aa9.52□□□□□ -0.89
RTN3-207ENST00000536011 RBMY1A1P0DJD3 496 aaKnown RBP9.51□□□□□ -0.89
RTN3-207ENST00000536011 RBMY1CP0DJD4 496 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 SLC25A6P12236 298 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 HLA-DRB4P13762 266 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 VAMP1P23763 118 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 HLA-DMBP28068 263 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 S100A5P33763 92 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 GAMTQ14353 236 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 RBMY1FQ15415 496 aaKnown RBP9.51□□□□□ -0.89
RTN3-207ENST00000536011 PYDC2Q56P42 97 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 CSNK1G2-AS1Q8NCQ2 148 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 PPP1R14BQ96C90 147 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 CIB3Q96Q77 187 aaPredicted RBP9.51□□□□□ -0.89
RTN3-207ENST00000536011 SLC25A21Q9BQT8 299 aaPredicted RBP9.51□□□□□ -0.89
RTN3-207ENST00000536011 CLEC5AQ9NY25 188 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 HLA-DRB4X5D2U9 266 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 X6R8D5 127 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 AGRNO00468 2067 aa9.51□□□□□ -0.89
RTN3-207ENST00000536011 SNRPGP15A8MWD9 76 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 H3BMM0 161 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 CFDP00746 253 aaPredicted RBP9.5□□□□□ -0.89
RTN3-207ENST00000536011 S100A7P31151 101 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 PSMB3P49720 205 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 SPATA31B1PQ5VZV4 182 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 Q6ZTC4 211 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 LRTM2Q8N967 370 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 COQ8AQ8NI60 647 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 XCL2Q9UBD3 114 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 TMED3Q9Y3Q3 217 aa9.5□□□□□ -0.89
RTN3-207ENST00000536011 TMEM189A5PLL7 270 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 MEOX2P50222 304 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 LYZP61626 148 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 FOXI2Q6ZQN5 318 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 TRIM63Q969Q1 353 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 TRGV9Q99603 122 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 RNF126Q9BV68 326 aa9.49□□□□□ -0.89
RTN3-207ENST00000536011 PAIP2BQ9ULR5 123 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms