RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 PAM16Q9Y3D7 125 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 CBY1Q9Y3M2 126 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 KLF12Q9Y4X4 402 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 PRR14LQ5THK1 2151 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 DOPEY1Q5JWR5 2465 aa5.13□□□□□ -1.59
SYNE1-233ENST00000535896 SPTAN1Q13813 2472 aaKnown RBP5.12□□□□□ -1.59
SYNE1-233ENST00000535896 IGHV3-64DA0A0J9YX35 117 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 TRBV6-1A0A0K0K1D8 114 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 A0A1B0GXF2 115 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 COX7A2P2O60397 106 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 ACTL6BO94805 426 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 PRB1P04280 392 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 OR5AL1P0C617 328 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 C3orf79P0CE67 100 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 HNF1AP20823 631 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 MC5RP33032 325 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 MYCNOSP40205 109 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF83P51522 516 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 HNRNPA3P51991 378 aaKnown RBP5.12□□□□□ -1.59
SYNE1-233ENST00000535896 PLP1P60201 277 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 KRTDAPP60985 99 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 TNFAIP6P98066 277 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-233ENST00000535896 C10orf113Q5VZT2 155 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 GFRALQ6UXV0 394 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF329Q86UD4 541 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 NIT1Q86X76 327 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 NHLRC2Q8NBF2 726 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 OR8B3Q8NGG8 313 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 ITLN1Q8WWA0 313 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 TNFRSF14Q92956 283 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 CHCHD1Q96BP2 118 aaKnown RBP5.12□□□□□ -1.59
SYNE1-233ENST00000535896 PERPQ96FX8 193 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 FMC1Q96HJ9 113 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 HARBI1Q96MB7 349 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 OR8B2Q96RD0 313 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 PAXXQ9BUH6 204 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 RNASE7Q9H1E1 156 aaKnown RBP5.12□□□□□ -1.59
SYNE1-233ENST00000535896 GCM1Q9NP62 436 aa5.12□□□□□ -1.59
SYNE1-233ENST00000535896 GCN1Q92616 2671 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 TRAV9-2A0A087WT02 112 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 IGHV2-26A0A0B4J1V2 119 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 A0A1B0GW15 77 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 A8MWL6 223 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 H0YJW9 148 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 PRRG2O14669 202 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 HYPMO75409 117 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 HSBP1O75506 76 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 CRYGCP07315 174 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 MGST1P10620 155 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 LGALS7P47929 136 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 CASP6P55212 293 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 RPS20P60866 119 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 UBE2G1P62253 170 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 HBBP68871 147 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 VMA21Q3ZAQ7 101 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 ZCCHC24Q8N2G6 241 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 C5orf17Q8NAS9 161 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 FAM57AQ8TBR7 257 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 FLYWCH2Q96CP2 140 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 GPR82Q96P67 336 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 TRGV9Q99603 122 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 TXN2Q99757 166 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 SRSF8Q9BRL6 282 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 ATG101Q9BSB4 218 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 HINT2Q9BX68 163 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 ST20Q9HBF5 79 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 RNF24Q9Y225 148 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 ZNF835Q9Y2P0 537 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 LAMTOR2Q9Y2Q5 125 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 WASHC3Q9Y3C0 194 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 SPTBN1Q01082 2364 aaKnown RBP5.11□□□□□ -1.59
SYNE1-233ENST00000535896 PCNX1Q96RV3 2341 aa5.11□□□□□ -1.59
SYNE1-233ENST00000535896 IGHV3OR15-7A0A075B7D8 119 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 IGHV1-69-2A0A0G2JMI3 117 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 F2Z2F3 143 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 M0R1B8 84 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 FSTL3O95633 263 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 TOMM40O96008 361 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 IGHV1-46P01743 117 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 HLA-DRB1P01911 266 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 TFF1P04155 84 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 IGKV1-16P04430 117 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 CHRNB4P30926 498 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 SLAQ13239 276 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 MMDQ15546 238 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 MSMPQ1L6U9 139 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 C1orf185Q5T7R7 199 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 Q6AWC8 147 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 MRPL54Q6P161 138 aaKnown RBP5.1□□□□□ -1.59
SYNE1-233ENST00000535896 C16orf54Q6UWD8 224 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 GATD1Q8NB37 220 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 TMEM116Q8NCL8 245 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 NUP35Q8NFH5 326 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 OR9G1Q8NH87 305 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 FXYD5Q96DB9 178 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 RCHY1Q96PM5 261 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 ALKBH7Q9BT30 221 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-233ENST00000535896 MLST8Q9BVC4 326 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 PRSS22Q9GZN4 317 aa5.1□□□□□ -1.59
SYNE1-233ENST00000535896 RPP21Q9H633 154 aaKnown RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms