RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 SCAF4O95104 1147 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 RNASE2P10153 161 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 RPL12P30050 165 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 SNCAP37840 140 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 EIF2B2P49770 351 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 RPP30P78346 268 aaKnown RBP11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 BSXQ3C1V8 233 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 TMEM14EPQ6UXP3 125 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 TMEM252Q8N6L7 170 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 OR1P1Q8NH06 330 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 TMEM170AQ8WVE7 144 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 ATP6V0BQ99437 205 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 OVOL2Q9BRP0 275 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 MFFQ9GZY8 342 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 SLC25A31Q9H0C2 315 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 MLXQ9UH92 298 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 DMRT1Q9Y5R6 373 aa11.76□□□□□ -0.53
CHMP4A-207ENST00000533523 LOC102724200A0A096LPH7 203 aaPredicted RBP11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 TMEM213A2RRL7 107 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 RNF222A6NCQ9 220 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 NUPR2A6NF83 97 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 CLEC3BP05452 202 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 METTL15P1P0C7V9 234 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 CBLN1P23435 193 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 GPR183P32249 361 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 EWSR1Q01844 656 aaKnown RBP eCLIP11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 C2orf83Q53S99 150 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 BTNL8Q6UX41 500 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 ACOT7LQ6ZUV0 252 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 ZNF114Q8NC26 417 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 AQP10Q96PS8 301 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 DNAH11Q96DT5 4516 aa11.75□□□□□ -0.53
CHMP4A-207ENST00000533523 CST7O76096 145 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 CXCL2P19875 107 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 AP2S1P53680 142 aaPredicted RBP11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 SUB1P53999 127 aaKnown RBP eCLIP11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 ATP5IP56385 69 aaPredicted RBP11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 RAB11AP62491 216 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 STX12Q86Y82 276 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 BSCL2Q96G97 398 aaPredicted RBP11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 C21orf62Q9NYP8 219 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 HSPB11Q9Y547 144 aa11.74□□□□□ -0.53
CHMP4A-207ENST00000533523 A0A0J9YWU9 116 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 A8MWP6 167 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 TGOLN2O43493 480 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 IFNA4P05014 189 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 SULT1A1P50225 295 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 MFAP2P55001 183 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 NHLH2Q02577 135 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 BAXQ07812 192 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 ARL16Q0P5N6 197 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 OR2F1Q13607 317 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 OR8G2PQ6IF36 304 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 SPSB3Q6PJ21 355 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 C9orf62Q8N4C0 152 aa11.73□□□□□ -0.53
CHMP4A-207ENST00000533523 PMS2P5A8MQ11 134 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 ZNF345Q14585 488 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 LGALSLQ3ZCW2 172 aaPredicted RBP11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 TM4SF20Q53R12 229 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 PVRIGQ6DKI7 326 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 LAMTOR1Q6IAA8 161 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 KCNRGQ8N5I3 272 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 TMEM217Q8N7C4 229 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 SCARB1Q8WTV0 552 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 MARC2Q969Z3 335 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 UFC1Q9Y3C8 167 aa11.72□□□□□ -0.53
CHMP4A-207ENST00000533523 PKD1P98161 4303 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 A0A0D9SG52 128 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 K7EIM0 57 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 ELLP55199 621 aaPredicted RBP11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 SLC38A11Q08AI6 406 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 DEFB135Q30KP9 77 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 Q56UQ5 140 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 RBPMS2Q6ZRY4 209 aaKnown RBP11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 TMUB2Q71RG4 321 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 OR1S2Q8NGQ3 325 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 MISP3Q96FF7 219 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 SMIM3Q9BZL3 60 aa11.71□□□□□ -0.53
CHMP4A-207ENST00000533523 IGHV3-21A0A0B4J1V1 117 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 OR2T8A6NH00 312 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 PRSS46E5RG02 174 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 CORTO00230 105 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 FCGR2BP31994 310 aaPredicted RBP11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 APOC4P55056 127 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 HBG1P69891 147 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 HBG2P69892 147 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 UNQ9165/PRO28630Q6UXU0 137 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 UBAC2Q8NBM4 344 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 OR10P1Q8NGE3 313 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 RNASEH2CQ8TDP1 164 aaKnown RBP11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 TXN2Q99757 166 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 ARL6Q9H0F7 186 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 FBXL17Q9UF56 701 aa11.7□□□□□ -0.54
CHMP4A-207ENST00000533523 IGHV3-35A0A0C4DH35 117 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 I3L2K1 104 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 NDUFA4O00483 81 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 S100A11P31949 105 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 MFAP4P55083 255 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 CLINT1Q14677 625 aa11.69□□□□□ -0.54
CHMP4A-207ENST00000533523 CEMP1Q6PRD7 247 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 347.8 ms