RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PAIP2BQ9ULR5 123 aaKnown RBP11.29□□□□□ -0.6
CPSF1-211ENST00000533492 DNAH1Q9P2D7 4330 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 BUB3O43684 328 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 MED6O75586 246 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 FABP1P07148 127 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 NUP62P37198 522 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-211ENST00000533492 INPP1P49441 399 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 SNRPD3P62318 126 aaKnown RBP11.28□□□□□ -0.6
CPSF1-211ENST00000533492 PSMG4Q5JS54 123 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 SPANXN2Q5MJ10 180 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 SIGLEC15Q6ZMC9 328 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 CCDC190Q86UF4 302 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 LRTM2Q8N967 370 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 RNF125Q96EQ8 232 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 RAB40CQ96S21 281 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 PBDC1Q9BVG4 233 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 C11orf68Q9H3H3 251 aaKnown RBP11.28□□□□□ -0.6
CPSF1-211ENST00000533492 FBXL17Q9UF56 701 aa11.28□□□□□ -0.6
CPSF1-211ENST00000533492 FAM90A26D6RGX4 464 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 DEFB4AO15263 64 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 PITX3O75364 302 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 SFT2D2O95562 160 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 IAPPP10997 89 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 SLC25A6P12236 298 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 NANOS2P60321 138 aaKnown RBP11.27□□□□□ -0.61
CPSF1-211ENST00000533492 GAMTQ14353 236 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 CENPSQ8N2Z9 138 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 NRN1Q9NPD7 142 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 TMED3Q9Y3Q3 217 aa11.27□□□□□ -0.61
CPSF1-211ENST00000533492 SNRPGP15A8MWD9 76 aa11.26□□□□□ -0.61
CPSF1-211ENST00000533492 HOXB5P09067 269 aa11.26□□□□□ -0.61
CPSF1-211ENST00000533492 RPP30P78346 268 aaKnown RBP11.26□□□□□ -0.61
CPSF1-211ENST00000533492 ZNF90Q03938 601 aa11.26□□□□□ -0.61
CPSF1-211ENST00000533492 PPP1R1AQ13522 171 aa11.26□□□□□ -0.61
CPSF1-211ENST00000533492 CIB3Q96Q77 187 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-211ENST00000533492 SEPSECSQ9HD40 501 aaKnown RBP11.26□□□□□ -0.61
CPSF1-211ENST00000533492 PLECQ15149 4684 aaKnown RBP11.25□□□□□ -0.61
CPSF1-211ENST00000533492 OR8G2PQ6IF36 304 aa11.25□□□□□ -0.61
CPSF1-211ENST00000533492 PPP1R14BQ96C90 147 aa11.25□□□□□ -0.61
CPSF1-211ENST00000533492 MAGT1Q9H0U3 335 aa11.25□□□□□ -0.61
CPSF1-211ENST00000533492 IGKV1D-37A0A075B6S9 117 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 ZNF701M0R085 212 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-211ENST00000533492 WRBO00258 174 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 SYNGR2O43760 224 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 GIG44P09565 113 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-211ENST00000533492 C4BPBP20851 252 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 UBE2MP61081 183 aaKnown RBP11.24□□□□□ -0.61
CPSF1-211ENST00000533492 LYZP61626 148 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 NUTF2P61970 127 aaKnown RBP11.24□□□□□ -0.61
CPSF1-211ENST00000533492 OR2F1Q13607 317 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 TRIQKQ629K1 86 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 SRRQ9GZT4 340 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 RBM38Q9H0Z9 239 aaKnown RBP11.24□□□□□ -0.61
CPSF1-211ENST00000533492 CLEC5AQ9NY25 188 aa11.24□□□□□ -0.61
CPSF1-211ENST00000533492 HYDINQ4G0P3 5121 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 NAP1L6A6NFF2 107 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 MIFP14174 115 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 ID1P41134 155 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 GGNBP1Q5YKI7 109 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 Q8NAQ8 132 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 TRGV9Q99603 122 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 C1QTNF4Q9BXJ3 329 aa11.23□□□□□ -0.61
CPSF1-211ENST00000533492 IGHV4-28A0A0C4DH34 117 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 SPANXN5Q5MJ07 72 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 C1orf194Q5T5A4 169 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 C2CD4CQ8TF44 421 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 LINC00052Q96N35 136 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 TBC1D24Q9ULP9 559 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 ALMS1Q8TCU4 4167 aa11.22□□□□□ -0.61
CPSF1-211ENST00000533492 LINC00854A0A1B0GVQ3 168 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 C9orf170A2RU37 121 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 CENPXA8MT69 81 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 ZNF705EA8MWA4 302 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 H3BMM0 161 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 CFDP00746 253 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 RBMY1A1P0DJD3 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 RBMY1CP0DJD4 496 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 NKX2-1P43699 371 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 RBMY1FQ15415 496 aaKnown RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 BAK1Q16611 211 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 OR8I2Q8N0Y5 310 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 COQ8AQ8NI60 647 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 HRH4Q9H3N8 390 aa11.21□□□□□ -0.61
CPSF1-211ENST00000533492 STRAPQ9Y3F4 350 aaKnown RBP11.21□□□□□ -0.61
CPSF1-211ENST00000533492 C11orf94C9JXX5 98 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 NDUFB6O95139 128 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 IFNA21P01568 189 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 LGALS9CQ6DKI2 356 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 THAP8Q8NA92 274 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 CSNK1G2-AS1Q8NCQ2 148 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 XCL2Q9UBD3 114 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 X6R8D5 127 aa11.2□□□□□ -0.62
CPSF1-211ENST00000533492 IGKV1OR2-108A0A075B7D4 117 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 H3BP45 60 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 ADAP1O75689 374 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 HLA-DRB4P13762 266 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 AKR1C1Q04828 323 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 BPIFCQ8NFQ6 507 aa11.19□□□□□ -0.62
CPSF1-211ENST00000533492 WDR12Q9GZL7 423 aaKnown RBP11.19□□□□□ -0.62
CPSF1-211ENST00000533492 FLVCR2Q9UPI3 526 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms