RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MLXQ9UH92 298 aa11.36□□□□□ -0.59
CPSF1-208ENST00000532560 CLN5O75503 358 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 SCGB2A1O75556 95 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 MED6O75586 246 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 ADAP1O75689 374 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 IFNA10P01566 189 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 ETFRF1Q6IPR1 90 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 OR10C1Q96KK4 312 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 LINC00052Q96N35 136 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 C20orf24Q9BUV8 137 aa11.35□□□□□ -0.59
CPSF1-208ENST00000532560 MRPL36Q9P0J6 103 aaKnown RBP11.35□□□□□ -0.59
CPSF1-208ENST00000532560 TMEM50AO95807 157 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 BTNL8Q6UX41 500 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 ZNF600Q6ZNG1 722 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 GTSCR1Q86UQ5 136 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 Q8N1Y9 231 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 TMEM116Q8NCL8 245 aa11.34□□□□□ -0.59
CPSF1-208ENST00000532560 CIB3Q96Q77 187 aaPredicted RBP11.34□□□□□ -0.59
CPSF1-208ENST00000532560 TMA7Q9Y2S6 64 aaKnown RBP11.34□□□□□ -0.59
CPSF1-208ENST00000532560 IGHV3OR16-8A0A075B7F1 116 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 MPTX1A8MV57 137 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 SYNGR2O43760 224 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 CD69Q07108 199 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 MLANAQ16655 118 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 IAH1Q2TAA2 248 aaPredicted RBP11.33□□□□□ -0.6
CPSF1-208ENST00000532560 TMEM61Q8N0U2 210 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 ZFAND3Q9H8U3 227 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 CYTL1Q9NRR1 136 aa11.33□□□□□ -0.6
CPSF1-208ENST00000532560 TRAV30A0A087WSZ9 112 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 TRAV25A0A0B4J276 109 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 ZNF785A8K8V0 405 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 A8MZ25 164 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 E5RGE8 158 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 H0YIZ8 118 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 JTBO76095 146 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 YIF1AO95070 293 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 IGKV1-17P01599 117 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 IAPPP10997 89 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 RND2P52198 227 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 RAB32Q13637 225 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 TOMM20LQ6UXN7 152 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 SLC16A13Q7RTY0 426 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 OR4D5Q8NGN0 318 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 GINS3Q9BRX5 216 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 MAGT1Q9H0U3 335 aa11.32□□□□□ -0.6
CPSF1-208ENST00000532560 PUS1Q9Y606 427 aaKnown RBP eCLIP11.32□□□□□ -0.6
CPSF1-208ENST00000532560 IGHV7-4-1A0A0J9YVY3 117 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 K7EPK0 472 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 ZNF207O43670 478 aaKnown RBP11.31□□□□□ -0.6
CPSF1-208ENST00000532560 DEDDO75618 318 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 IFNA4P05014 189 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 IGLC1P0CG04 106 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 NKX2-1P43699 371 aaPredicted RBP11.31□□□□□ -0.6
CPSF1-208ENST00000532560 RAB11AP62491 216 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 RPP30P78346 268 aaKnown RBP11.31□□□□□ -0.6
CPSF1-208ENST00000532560 BLOC1S1P78537 153 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 ID3Q02535 119 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 GUCA2BQ16661 112 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 OR1S2Q8NGQ3 325 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 SMPXQ9UHP9 88 aa11.31□□□□□ -0.6
CPSF1-208ENST00000532560 FRMD6-AS1P0C7T7 363 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 IGHV4-30-4P0DP06 118 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 OR10J1P30954 320 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 GPX4P36969 197 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-208ENST00000532560 CD81P60033 236 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 TIGITQ495A1 244 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 RBPMS2Q6ZRY4 209 aaKnown RBP11.3□□□□□ -0.6
CPSF1-208ENST00000532560 OR5AC2Q9NZP5 309 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 SELENOKQ9Y6D0 94 aa11.3□□□□□ -0.6
CPSF1-208ENST00000532560 WRBO00258 174 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 CHEK1O14757 476 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 SCAF4O95104 1147 aaKnown RBP11.29□□□□□ -0.6
CPSF1-208ENST00000532560 RPL12P30050 165 aaKnown RBP11.29□□□□□ -0.6
CPSF1-208ENST00000532560 BMI1P35226 326 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 S100A10P60903 97 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 YPEL3P61236 119 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-208ENST00000532560 POLR2GP62487 172 aaKnown RBP eCLIP11.29□□□□□ -0.6
CPSF1-208ENST00000532560 FAM74A1Q5RGS3 127 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 NPIPB3Q92617 1050 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 ACY3Q96HD9 319 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 SMIM8Q96KF7 97 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 SPAG8Q99932 426 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-208ENST00000532560 RHPN1-AS1Q9BWJ2 59 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 C19orf73Q9NVV2 129 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 GSKIPQ9P0R6 139 aa11.29□□□□□ -0.6
CPSF1-208ENST00000532560 TSPAN4O14817 238 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 SSSCA1O60232 199 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 CD7P09564 240 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 NHLRC4P0CG21 123 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-208ENST00000532560 P2RY1P47900 373 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 SVBPQ8N300 66 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 SLC35E1Q96K37 410 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 VSIRQ9H7M9 311 aa11.28□□□□□ -0.6
CPSF1-208ENST00000532560 STRAPQ9Y3F4 350 aaKnown RBP11.28□□□□□ -0.6
CPSF1-208ENST00000532560 BORCS7-ASMTA0A0B4J1R7 106 aa11.27□□□□□ -0.61
CPSF1-208ENST00000532560 LOC105371267A0A1B0GV96 52 aa11.27□□□□□ -0.61
CPSF1-208ENST00000532560 TMEM218A2RU14 115 aa11.27□□□□□ -0.61
CPSF1-208ENST00000532560 PRSS46E5RG02 174 aa11.27□□□□□ -0.61
CPSF1-208ENST00000532560 SCO1O75880 301 aa11.27□□□□□ -0.61
CPSF1-208ENST00000532560 SULT1A2P50226 295 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms