RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 VPS13DQ5THJ4 4388 aa8.21□□□□□ -1.09
VPS28-214ENST00000531032 ELOA3CA0A087WX78 387 aaPredicted RBP8.21□□□□□ -1.1
VPS28-214ENST00000531032 A0A0B4J2A0 478 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 HELTA6NFD8 242 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 SLC25A4P12235 298 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 NPY1RP25929 384 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 HLA-DMBP28068 263 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 EIF2B2P49770 351 aaKnown RBP8.21□□□□□ -1.1
VPS28-214ENST00000531032 CCR6P51684 374 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 YPEL3P61236 119 aaPredicted RBP8.21□□□□□ -1.1
VPS28-214ENST00000531032 SMCO1Q147U7 214 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 ZNF79Q15937 498 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 C2orf83Q53S99 150 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 C16orf54Q6UWD8 224 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 Q6ZTC4 211 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 OR1S1Q8NH92 325 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 RNASEH2CQ8TDP1 164 aaKnown RBP8.21□□□□□ -1.1
VPS28-214ENST00000531032 DEDD2Q8WXF8 326 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 SHPKQ9UHJ6 478 aa8.21□□□□□ -1.1
VPS28-214ENST00000531032 TRAV10A0A0B4J240 114 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 IFNA10P01566 189 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 HNRNPCP07910 306 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS28-214ENST00000531032 OR10J1P30954 320 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 RND2P52198 227 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 AP2S1P53680 142 aaPredicted RBP8.2□□□□□ -1.1
VPS28-214ENST00000531032 DHRS2Q13268 280 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 PSMG4Q5JS54 123 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 Q8WTZ3 238 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 TMEM170AQ8WVE7 144 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 RAB40CQ96S21 281 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 SLC25A21Q9BQT8 299 aaPredicted RBP8.2□□□□□ -1.1
VPS28-214ENST00000531032 SEPSECSQ9HD40 501 aaKnown RBP8.2□□□□□ -1.1
VPS28-214ENST00000531032 CLEC5AQ9NY25 188 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 TBC1D24Q9ULP9 559 aa8.2□□□□□ -1.1
VPS28-214ENST00000531032 IGHV4-4A0A075B6R2 117 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 DUXBA0A1W2PPF3 345 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 FAM90A26D6RGX4 464 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 USF2Q15853 346 aaPredicted RBP8.19□□□□□ -1.1
VPS28-214ENST00000531032 CNPY1Q3B7I2 92 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 TMEM128Q5BJH2 165 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 ETFRF1Q6IPR1 90 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 LYZL2Q7Z4W2 148 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 CCDC190Q86UF4 302 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 CENPSQ8N2Z9 138 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 DTD1Q8TEA8 209 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 RNF126Q9BV68 326 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 NRN1Q9NPD7 142 aa8.19□□□□□ -1.1
VPS28-214ENST00000531032 BUB3O43684 328 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 TOMM40O96008 361 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 AMBPP02760 352 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 IL4P05112 153 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 SNRPD3P62318 126 aaKnown RBP8.18□□□□□ -1.1
VPS28-214ENST00000531032 SUPT4H1P63272 117 aaKnown RBP8.18□□□□□ -1.1
VPS28-214ENST00000531032 NMSQ5H8A3 153 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 ACY3Q96HD9 319 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 C1QTNF4Q9BXJ3 329 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 SRRQ9GZT4 340 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 PAIP2BQ9ULR5 123 aaKnown RBP8.18□□□□□ -1.1
VPS28-214ENST00000531032 CELA1Q9UNI1 258 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 DNAH6Q9C0G6 4158 aa8.18□□□□□ -1.1
VPS28-214ENST00000531032 LINC00854A0A1B0GVQ3 168 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 NAP1L6A6NFF2 107 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 CENPXA8MT69 81 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 H3BMM0 161 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 RD3LP0DJH9 198 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 NUTF2P61970 127 aaKnown RBP8.17□□□□□ -1.1
VPS28-214ENST00000531032 C12orf74Q32Q52 190 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 SIGLEC15Q6ZMC9 328 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 NPIPB3Q92617 1050 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 RBKSQ9H477 322 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 BATF3Q9NR55 127 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 HSPB7Q9UBY9 170 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 U3KQ87 197 aa8.17□□□□□ -1.1
VPS28-214ENST00000531032 DEFB131BA0A096LNP1 70 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 MED6O75586 246 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 SFT2D2O95562 160 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 IAPPP10997 89 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 HLA-DRB4P13762 266 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 PPP1R1AQ13522 171 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 LINC00336Q6ZUF6 198 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 SLC35E1Q96K37 410 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 XCL2Q9UBD3 114 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 HLA-DRB4X5D2U9 266 aa8.16□□□□□ -1.1
VPS28-214ENST00000531032 KIAA1109Q2LD37 5005 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 HOXB5P09067 269 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 PSG1P11464 419 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 NUP62P37198 522 aaPredicted RBP8.15□□□□□ -1.1
VPS28-214ENST00000531032 NKX2-1P43699 371 aaPredicted RBP8.15□□□□□ -1.1
VPS28-214ENST00000531032 UBE2MP61081 183 aaKnown RBP8.15□□□□□ -1.1
VPS28-214ENST00000531032 RAB11AP62491 216 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 ZNF705AQ6ZN79 300 aaPredicted RBP8.15□□□□□ -1.1
VPS28-214ENST00000531032 ZNF767PQ75MW2 155 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 COQ8AQ8NI60 647 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 RNF125Q96EQ8 232 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 CIB3Q96Q77 187 aaPredicted RBP8.15□□□□□ -1.1
VPS28-214ENST00000531032 NEU1Q99519 415 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 TMED3Q9Y3Q3 217 aa8.15□□□□□ -1.1
VPS28-214ENST00000531032 ZFP92A6NM28 416 aa8.14□□□□□ -1.11
VPS28-214ENST00000531032 ZNF705FA8MVS1 300 aaPredicted RBP8.14□□□□□ -1.11
VPS28-214ENST00000531032 WRBO00258 174 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms