RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 RNF125Q96EQ8 232 aa9.78□□□□□ -0.84
VPS28-211ENST00000530790 CIB3Q96Q77 187 aaPredicted RBP9.78□□□□□ -0.84
VPS28-211ENST00000530790 PBDC1Q9BVG4 233 aa9.78□□□□□ -0.84
VPS28-211ENST00000530790 PAIP2BQ9ULR5 123 aaKnown RBP9.78□□□□□ -0.84
VPS28-211ENST00000530790 NDUFB6O95139 128 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 HOXB5P09067 269 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 RPP30P78346 268 aaKnown RBP9.77□□□□□ -0.85
VPS28-211ENST00000530790 EWSR1Q01844 656 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS28-211ENST00000530790 DHRS2Q13268 280 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 GAMTQ14353 236 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 BAK1Q16611 211 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 SIGLEC15Q6ZMC9 328 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 RARRES2Q99969 163 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 PFDN2Q9UHV9 154 aa9.77□□□□□ -0.85
VPS28-211ENST00000530790 CENPXA8MT69 81 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 SYNGR2O43760 224 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 GGNBP1Q5YKI7 109 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 OR8G2PQ6IF36 304 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 MAGT1Q9H0U3 335 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 C11orf68Q9H3H3 251 aaKnown RBP9.76□□□□□ -0.85
VPS28-211ENST00000530790 NRN1Q9NPD7 142 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 SACSQ9NZJ4 4579 aa9.76□□□□□ -0.85
VPS28-211ENST00000530790 LINC00854A0A1B0GVQ3 168 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 C9orf170A2RU37 121 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 KNCNA6PVL3 124 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 WRBO00258 174 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 BUB3O43684 328 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 SPP1P10451 314 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 LYZP61626 148 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 SNRPD3P62318 126 aaKnown RBP9.75□□□□□ -0.85
VPS28-211ENST00000530790 ZNF90Q03938 601 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 TMEM41BQ5BJD5 291 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 PSMG4Q5JS54 123 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 MORN3Q6PF18 240 aaPredicted RBP9.75□□□□□ -0.85
VPS28-211ENST00000530790 TRPT1Q86TN4 253 aaKnown RBP9.75□□□□□ -0.85
VPS28-211ENST00000530790 OR11H2Q8NH07 326 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 COQ8AQ8NI60 647 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 C7orf50Q9BRJ6 194 aaKnown RBP9.75□□□□□ -0.85
VPS28-211ENST00000530790 LYSTQ99698 3801 aa9.75□□□□□ -0.85
VPS28-211ENST00000530790 IGKV1D-37A0A075B6S9 117 aa9.74□□□□□ -0.85
VPS28-211ENST00000530790 ADAP1O75689 374 aa9.74□□□□□ -0.85
VPS28-211ENST00000530790 ACTL10Q5JWF8 245 aa9.74□□□□□ -0.85
VPS28-211ENST00000530790 TRGV9Q99603 122 aa9.74□□□□□ -0.85
VPS28-211ENST00000530790 SDHCQ99643 169 aaPredicted RBP9.74□□□□□ -0.85
VPS28-211ENST00000530790 FLVCR2Q9UPI3 526 aa9.74□□□□□ -0.85
VPS28-211ENST00000530790 SNRPGP15A8MWD9 76 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 H3BP45 60 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 IFNA21P01568 189 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 OR4E1P0C645 316 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 IL7P13232 177 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 BTCP35070 178 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 C4orf46Q504U0 113 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 SPANXN5Q5MJ07 72 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 CEMP1Q6PRD7 247 aaPredicted RBP9.73□□□□□ -0.85
VPS28-211ENST00000530790 PPP1R14BQ96C90 147 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 NDUFA13Q9P0J0 144 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 FBXL17Q9UF56 701 aa9.73□□□□□ -0.85
VPS28-211ENST00000530790 STRAPQ9Y3F4 350 aaKnown RBP9.73□□□□□ -0.85
VPS28-211ENST00000530790 ANXA7P20073 488 aaKnown RBP9.72□□□□□ -0.85
VPS28-211ENST00000530790 C4BPBP20851 252 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 NKX2-1P43699 371 aaPredicted RBP9.72□□□□□ -0.85
VPS28-211ENST00000530790 AKR1C1Q04828 323 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 OR2F1Q13607 317 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 ACOT7LQ6ZUV0 252 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 THAP8Q8NA92 274 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 RAB40CQ96S21 281 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 MFFQ9GZY8 342 aa9.72□□□□□ -0.85
VPS28-211ENST00000530790 SEPSECSQ9HD40 501 aaKnown RBP9.72□□□□□ -0.85
VPS28-211ENST00000530790 KLK5Q9Y337 293 aaPredicted RBP9.72□□□□□ -0.85
VPS28-211ENST00000530790 IGKV1OR2-108A0A075B7D4 117 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 PRSS46E5RG02 174 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 SSSCA1O60232 199 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 CFDP00746 253 aaPredicted RBP9.71□□□□□ -0.86
VPS28-211ENST00000530790 CNPY1Q3B7I2 92 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 C1orf194Q5T5A4 169 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 LINC00476Q8WZB0 136 aa9.71□□□□□ -0.86
VPS28-211ENST00000530790 DEFB4AO15263 64 aa9.7□□□□□ -0.86
VPS28-211ENST00000530790 SCGB1D2O95969 90 aa9.7□□□□□ -0.86
VPS28-211ENST00000530790 GIG44P09565 113 aaPredicted RBP9.7□□□□□ -0.86
VPS28-211ENST00000530790 NUTF2P61970 127 aaKnown RBP9.7□□□□□ -0.86
VPS28-211ENST00000530790 POLR2GP62487 172 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS28-211ENST00000530790 OR4D5Q8NGN0 318 aa9.7□□□□□ -0.86
VPS28-211ENST00000530790 C11orf45Q8TAV5 145 aa9.7□□□□□ -0.86
VPS28-211ENST00000530790 PHLDA1Q8WV24 401 aaPredicted RBP9.7□□□□□ -0.86
VPS28-211ENST00000530790 C20orf85Q9H1P6 137 aa9.7□□□□□ -0.86
VPS28-211ENST00000530790 SMCO3A2RU48 225 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 LYRM1O43325 122 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 HLA-DRB4P13762 266 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 MIFP14174 115 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 ID1P41134 155 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 PSMB3P49720 205 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 NANOS2P60321 138 aaKnown RBP9.69□□□□□ -0.86
VPS28-211ENST00000530790 ID3Q02535 119 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 OR8I2Q8N0Y5 310 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 Q8NAQ8 132 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 BPIFCQ8NFQ6 507 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 ALMS1Q8TCU4 4167 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 C1QTNF4Q9BXJ3 329 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 CLEC5AQ9NY25 188 aa9.69□□□□□ -0.86
VPS28-211ENST00000530790 PSENENQ9NZ42 101 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms