RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CCL21O00585 134 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 SS18L2Q9UHA2 77 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 IGHG3P01860 377 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 PF4P02776 101 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 TRPT1Q86TN4 253 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV1D-13A0A0B4J2D9 117 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV1-8A0A0C4DH67 115 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 IGKV1-13P0DP09 117 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 ZNRF1Q8ND25 227 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 TPRP12270 2363 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 TRBV6-6A0A0A6YYG2 114 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 SS18Q15532 418 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 TMEM92Q6UXU6 159 aa9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 MRPL55Q7Z7F7 128 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 DMRTC2Q8IXT2 367 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-217ENST00000512946 PLCH1Q4KWH8 1693 aa9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 RREB1Q92766 1687 aa9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 K7EMI3 77 aa9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 CELA2BP08218 269 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 SRSF2Q01130 221 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 Q6ZS49 121 aa9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 DEFB125Q8N687 156 aa9.27□□□□□ -0.92
LIMCH1-217ENST00000512946 SAA2-SAA4A0A096LPE2 208 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 SAA2P0DJI9 122 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 LIME1Q9H400 295 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 VSIRQ9H7M9 311 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 MBNL3Q9NUK0 354 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 ZNF319Q9P2F9 582 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3-64A0A075B6Q5 118 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3OR16-13A0A075B7E8 117 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3-74A0A0B4J1X5 117 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3-35A0A0C4DH35 117 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 CCL4P13236 92 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 MRPL14Q6P1L8 145 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 CARD19Q96LW7 228 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 SIGLEC8Q9NYZ4 499 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 LSM4Q9Y4Z0 139 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 J3QRE1 110 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 CRYBA4P53673 196 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 SUMO4Q6EEV6 95 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 SIGLEC15Q6ZMC9 328 aa9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 ZNF625Q96I27 306 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-217ENST00000512946 TRAV40A0A0B4J280 105 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 PRSS46E5RG02 174 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 SH2D1AO60880 128 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 CD55P08174 381 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 CD33P20138 364 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 TMEM243Q9BU79 118 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 SLX4Q8IY92 1834 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 EIF4EBP2Q13542 120 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 KLF2Q9Y5W3 355 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 ADCYAP1P18509 176 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 SCRT1Q9BWW7 348 aa9.26□□□□□ -0.93
LIMCH1-217ENST00000512946 FAM104BQ5XKR9 115 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 TMEM133Q9H2Q1 129 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 TRIP11Q15643 1979 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 KIR2DL5BA0A0G2JN68 375 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 KIR2DL5BA0A0G2JPC4 375 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 IGLL1P15814 213 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 SUPT4H1P63272 117 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 PAX8Q06710 450 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 FOXC1Q12948 553 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 KIR2DL5AQ8N109 375 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 MAFAQ8NHW3 353 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 SHISA9B4DS77 424 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 STPG4Q8N801 248 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 PRR7Q8TB68 274 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 RCHY1Q96PM5 261 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 IGLC7A0M8Q6 106 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 F8VRH5 84 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 HLA-DRB4P13762 266 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 COA6Q5JTJ3 125 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 HLA-DRB4X5D2U9 266 aa9.25□□□□□ -0.93
LIMCH1-217ENST00000512946 F6UB75 175 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 EGR2P11161 476 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 KLRD1Q13241 179 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 SRXN1Q9BYN0 137 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 ICE1Q9Y2F5 2266 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 PAQR4Q8N4S7 273 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 DICER1Q9UPY3 1922 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 FOXG1P55316 489 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 Q86TA4 180 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 IMMP1LQ96LU5 166 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 LAMA4Q16363 1823 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 PHIPQ8WWQ0 1821 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 KNL1Q8NG31 2342 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3-49A0A0A0MS15 119 aa9.24□□□□□ -0.93
LIMCH1-217ENST00000512946 PPIFP30405 207 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 TMEM75Q8N9X5 138 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 NTN5Q8WTR8 489 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 GLMPQ8WWB7 406 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 WBP1Q96G27 269 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 IGHV3-66A0A0C4DH42 116 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 HAX1O00165 279 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 C1QCP02747 245 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 SLC25A16P16260 332 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 CDKN1AP38936 164 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 C5orf47Q569G3 176 aa9.23□□□□□ -0.93
LIMCH1-217ENST00000512946 C2orf66Q6UXQ4 117 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms