RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 C8orf46Q8TAG6 207 aa12.84□□□□□ -0.35
SQSTM1-213ENST00000510187 C2orf88Q9BSF0 95 aa12.84□□□□□ -0.35
SQSTM1-213ENST00000510187 NAGKQ9UJ70 344 aa12.84□□□□□ -0.35
SQSTM1-213ENST00000510187 VPS13CQ709C8 3753 aa12.83□□□□□ -0.35
SQSTM1-213ENST00000510187 SNURFLB1AK76 121 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 ZFP36P26651 326 aaKnown RBP12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 IER3P46695 156 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 WT1-ASQ06250 92 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 Q5PR19 223 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 C10orf113Q5VZT2 155 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 PVRIGQ6DKI7 326 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 ETFRF1Q6IPR1 90 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 OR5AU1Q8NGC0 362 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 OR2T6Q8NHC8 308 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 TNFRSF14Q92956 283 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 TP53TG3Q9ULZ0 132 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 UNC79Q9P2D8 2635 aa12.83□□□□□ -0.36
SQSTM1-213ENST00000510187 KIR2DL5BA0A0G2JN68 375 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 KIR2DL5BA0A0G2JPC4 375 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 NUPR1O60356 82 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 SCGB1D1O95968 90 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 LIPFP07098 398 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 REG1BP48304 166 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 C1orf194Q5T5A4 169 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 KIR2DL5AQ8N109 375 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 LY6G5BQ8NDX9 201 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 A0A1B0GUS0 222 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 SMIM27A0A1W2PRY6 76 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 GRIFINA4D1Z8 144 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 TEX45Q8NA69 505 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 STXBP6Q8NFX7 210 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 PAXXQ9BUH6 204 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 FNDC4Q9H6D8 234 aaPredicted RBP12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 ONECUT1Q9UBC0 465 aa12.82□□□□□ -0.36
SQSTM1-213ENST00000510187 ASH1LQ9NR48 2969 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 IGKV1D-37A0A075B6S9 117 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 E7EUB6 86 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 AMY1AP04745 511 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 IGHV1-8P0DP01 117 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 LINC00310P59036 64 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 SSTP61278 116 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 PAX2Q02962 417 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 OR10J3Q5JRS4 329 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 IBA57Q5T440 356 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 RASL11AQ6T310 242 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 PRSS57Q6UWY2 283 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 FAM231DQ6ZW35 169 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 ZNF355PQ9NSJ1 428 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 CSMD1Q96PZ7 3565 aa12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 YLPM1P49750 1951 aaKnown RBP12.81□□□□□ -0.36
SQSTM1-213ENST00000510187 TNCP24821 2201 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 ENSAO43768 121 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 SERF1AO75920 110 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 HLA-DQA1P01909 254 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 CRYGCP07315 174 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 MORN5Q5VZ52 161 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 ZNF600Q6ZNG1 722 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 TMEM136Q6ZRR5 245 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 C11orf42Q8N5U0 333 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 NPIPB3Q92617 1050 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 RNASE7Q9H1E1 156 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 LPAR2Q9HBW0 351 aa12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 POLR3KQ9Y2Y1 108 aaPredicted RBP12.8□□□□□ -0.36
SQSTM1-213ENST00000510187 A0A1W2PPI3 338 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 PEX7O00628 323 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 DIAPH2-AS1Q14236 149 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 C10orf55Q5SWW7 151 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 PATE2Q6UY27 113 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 ZNF329Q86UD4 541 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 BAGE3Q86Y29 109 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 BAGE2Q86Y30 109 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 SMIM12Q96EX1 92 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 CHRDL1Q9BU40 450 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 TMEM133Q9H2Q1 129 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 AMMECR1Q9Y4X0 333 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 TRAV5A0A0B4J249 113 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 IZUMO1RA6ND01 250 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 SLC25A17O43808 307 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 MGST1P10620 155 aaKnown RBP12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 ARF6P62330 175 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 SSBP2P81877 361 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 MRGPRG-AS1Q2M3A8 158 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 Q6ZWC4 215 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 KRTAP1-3Q8IUG1 177 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 WIPF2Q8TF74 440 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 C22orf15Q8WYQ4 148 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 TRGV9Q99603 122 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 NAT8BQ9UHF3 227 aa12.79□□□□□ -0.36
SQSTM1-213ENST00000510187 MED13LQ71F56 2210 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 IGHV2-70DA0A0C4DH43 119 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 IGLC7A0M8Q6 106 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 RBP4P02753 201 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 TEX43Q6ZNM6 134 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 FXYD5Q96DB9 178 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 Q96MF0 132 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 ARHGAP32A7KAX9 2087 aa12.78□□□□□ -0.36
SQSTM1-213ENST00000510187 A0A096LNT2 108 aa12.77□□□□□ -0.36
SQSTM1-213ENST00000510187 RNF223E7ERA6 249 aa12.77□□□□□ -0.36
SQSTM1-213ENST00000510187 M0R1W7 72 aa12.77□□□□□ -0.36
SQSTM1-213ENST00000510187 CORTO00230 105 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms