RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HAX1O00165 279 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 NPPCP23582 126 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 NOVP48745 357 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 FOXA3P55318 350 aaPredicted RBP2.97□□□□□ -1.93
USP53-205ENST00000509769 FXYD7P58549 80 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 CLLU1OSQ5K130 101 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 ZC2HC1BQ5TFG8 222 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 TRPT1Q86TN4 253 aaKnown RBP2.97□□□□□ -1.93
USP53-205ENST00000509769 SHISA5Q8N114 240 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 WFDC11Q8NEX6 87 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 UBE2E2Q96LR5 201 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 RNF5Q99942 180 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 PRDM14Q9GZV8 571 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 ESM1Q9NQ30 184 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 COL4A3Q01955 1670 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 IGLV3-16A0A075B6K0 115 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 A0A1W2PRU2 124 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 EPOPA6NHQ4 379 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 USP17L23D6RBM5 183 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 FGF6P10767 208 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 GATA2P23769 480 aaPredicted RBP2.97□□□□□ -1.93
USP53-205ENST00000509769 FAM27BQ5VT28 67 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 TMEM42Q69YG0 159 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 SERP2Q8N6R1 65 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 C20orf78Q9BR46 151 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 SRXN1Q9BYN0 137 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 CYTL1Q9NRR1 136 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 IDI2-AS1Q9NZ38 188 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 MYH6P13533 1939 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 IGLL5B9A064 214 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 PRSS46E5RG02 174 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 RHODO00212 210 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 BCE1O60756 84 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 SCRG1O75711 98 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 LIFP15018 202 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 MPV17P39210 176 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 LINC00479Q96M42 142 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 C18orf15Q96N68 181 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 CLEC7AQ9BXN2 247 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 Q9H3A6 140 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 VSIRQ9H7M9 311 aa2.97□□□□□ -1.93
USP53-205ENST00000509769 PNRC2Q9NPJ4 139 aaKnown RBP2.97□□□□□ -1.93
USP53-205ENST00000509769 TRAV12-2A0A075B6T6 113 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 TRAV12-3A0A0B4J271 114 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 TEX48A0A1B0GUV7 120 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 ZSWIM8A7E2V4 1837 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 BGLAPP02818 100 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 CXCL17Q6UXB2 119 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 Q6ZS49 121 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 ZNF329Q86UD4 541 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 OCC1Q8TAD7 63 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 NTN5Q8WTR8 489 aaPredicted RBP2.96□□□□□ -1.93
USP53-205ENST00000509769 MYH2Q9UKX2 1941 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 MYH13Q9UKX3 1938 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 PSG8Q9UQ74 426 aa2.96□□□□□ -1.93
USP53-205ENST00000509769 A0A087WX48 190 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 A0A0G2JK05 382 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 A0A1W2PP55 124 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 TCRBV4S1A1TA0A5B7 111 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 F8VRH5 84 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 F8WDY8 70 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 COX7CP15954 63 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 CCL1P22362 96 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 CEACAM8P31997 349 aaPredicted RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 FUSP35637 526 aaKnown RBP eCLIP2.96□□□□□ -1.94
USP53-205ENST00000509769 NANOS3P60323 173 aaKnown RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 EGR4Q05215 589 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 LY6G6FQ5SQ64 297 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 FAM74A4Q5TZK3 123 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 GUSBP11Q6P575 273 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 WFDC9Q8NEX5 89 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 SSC4DQ8WTU2 575 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 MYH9P35579 1960 aaKnown RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 STATHP02808 62 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 BTCP35070 178 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 EIF4EBP1Q13541 118 aaPredicted RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 ZIC1Q15915 447 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 AMTNQ6UX39 209 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 C12orf76Q8N812 135 aaPredicted RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 RNASE8Q8TDE3 154 aaKnown RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 SCN9AQ15858 1988 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 MYH7P12883 1935 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 TRAV12-1A0A0B4J245 112 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 PRSS29PA6NIE9 313 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 MYF5P13349 255 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 HERVK_113P63121 156 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 NRGNQ92686 78 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 RNF185Q96GF1 192 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 LINC00477Q96M19 166 aa2.96□□□□□ -1.94
USP53-205ENST00000509769 MRPS18BQ9Y676 258 aaKnown RBP2.96□□□□□ -1.94
USP53-205ENST00000509769 LINC01619G3V211 115 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 ZNF32P17041 273 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 CD70P32970 193 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 LINC00158P58513 81 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 FOXF1Q12946 379 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 C6orf226Q5I0X4 101 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 LILRA3Q8N6C8 439 aaPredicted RBP2.95□□□□□ -1.94
USP53-205ENST00000509769 TMEM75Q8N9X5 138 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 C11orf52Q96A22 123 aa2.95□□□□□ -1.94
USP53-205ENST00000509769 RMI2Q96E14 147 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms