RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR10J6PQ8NGY7 276 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 OR10D3Q8NH80 312 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 JOSD2Q8TAC2 188 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PIFOQ8TCI5 191 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MAL2Q969L2 176 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 GNPNAT1Q96EK6 184 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 TVP23CQ96ET8 276 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 ADAT3Q96EY9 351 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 BMFQ96LC9 184 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 HSD17B10Q99714 261 aaKnown RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 RARRES2Q99969 163 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PMCHL2Q9BQD1 86 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 AGMATQ9BSE5 352 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 CHST6Q9GZX3 395 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PBOV1Q9GZY1 135 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TMEM191AQ9H0A3 160 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 VSIRQ9H7M9 311 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SPRR3Q9UBC9 169 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 LAMTOR3Q9UHA4 124 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MED31Q9Y3C7 131 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MPC1Q9Y5U8 109 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 LINC00312Q9Y6C7 94 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TET3O43151 1660 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 C3P01024 1663 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 C5P01031 1676 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 SCN8AQ9UQD0 1980 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 COL24A1Q17RW2 1714 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 PEAK1Q9H792 1746 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 AHDC1Q5TGY3 1603 aaPredicted RBP1.24□□□□□ -2.21
NUP54-208ENST00000508604 UBR2Q8IWV8 1755 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 MYLKQ15746 1914 aa1.24□□□□□ -2.21
NUP54-208ENST00000508604 TRAV8-6A0A0B4J262 113 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 LOC102725191A0A1B0GVB3 256 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 TRDV1A0A1B0GX56 115 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IRGMA1A4Y4 181 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ARRDC5A6NEK1 342 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF860A6NHJ4 632 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GGTLC3B5MD39 225 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 EEF1E1-BLOC1S5C9J1V9 151 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 E9PLD3 99 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GNGT2O14610 69 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GEMIN2O14893 280 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 EEF1E1O43324 174 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 ANGPTL7O43827 346 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PITX3O75364 302 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 DPM2O94777 84 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CA1P00915 261 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 PTHP01270 115 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 HBE1P02100 147 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CD55P08174 381 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MRPL3P09001 348 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 LGALS1P09382 135 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 IGLC6P0CF74 106 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FABP2P12104 132 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A6P12236 298 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PTHLHP12272 177 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OPRM1P35372 400 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ASIPP42127 132 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 KLK7P49862 253 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 EMDP50402 254 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 FABP6P51161 128 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 H2BFSP57053 126 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 RPS24P62847 133 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 HLA-DRB3P79483 266 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A11Q02978 314 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 VGLL4Q14135 290 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 IHHQ14623 411 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ATXN7L3Q14CW9 347 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR7A5Q15622 319 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 KLF17Q5JT82 389 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR2T5Q6IEZ7 315 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF880Q6PDB4 577 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SHISA6Q6ZSJ9 500 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF571Q7Z3V5 609 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 ANKRD37Q7Z713 158 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 C17orf82Q86X59 251 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 C10orf111Q8N326 155 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 WDR31Q8NA23 367 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZFP62Q8NB50 900 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR4K17Q8NGC6 315 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR51G1Q8NGK1 321 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR2T29Q8NH02 315 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR10G6Q8NH81 332 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR4A5Q8NH83 315 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 OR9G1Q8NH87 305 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ZNF502Q8TBZ5 544 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 SCGB1C1Q8TD33 95 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 C2orf15Q8WU43 125 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 SMIM4Q8WVI0 70 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 RTN4IP1Q8WWV3 396 aaPredicted RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 RAB37Q96AX2 223 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 CLDN23Q96B33 292 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 S100A16Q96FQ6 103 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 SEC22AQ96IW7 307 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 AQP10Q96PS8 301 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 PDCD1LG2Q9BQ51 273 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 MRPL45Q9BRJ2 306 aaKnown RBP1.23□□□□□ -2.21
NUP54-208ENST00000508604 RNF126Q9BV68 326 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 GABARAPL3Q9BY60 117 aa1.23□□□□□ -2.21
NUP54-208ENST00000508604 ULBP3Q9BZM4 244 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms