RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 C1QL4Q86Z23 238 aa10.66□□□□□ -0.7
C9orf3-221ENST00000489562 OR51G1Q8NGK1 321 aa10.66□□□□□ -0.7
C9orf3-221ENST00000489562 MGST2Q99735 147 aa10.66□□□□□ -0.7
C9orf3-221ENST00000489562 GGTLC1Q9BX51 225 aa10.66□□□□□ -0.7
C9orf3-221ENST00000489562 LGALS9O00182 355 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 PSG1P11464 419 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 RPL29P47914 159 aaKnown RBP10.65□□□□□ -0.7
C9orf3-221ENST00000489562 ZNF90Q03938 601 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 KLF5Q13887 457 aaPredicted RBP10.65□□□□□ -0.7
C9orf3-221ENST00000489562 OPCMLQ14982 345 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 PXDC1Q5TGL8 231 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 RPL7L1Q6DKI1 246 aaKnown RBP10.65□□□□□ -0.7
C9orf3-221ENST00000489562 REC114Q7Z4M0 266 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 TMEM190Q8WZ59 177 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 GNPNAT1Q96EK6 184 aaPredicted RBP10.65□□□□□ -0.7
C9orf3-221ENST00000489562 GINS3Q9BRX5 216 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 CYTL1Q9NRR1 136 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 SLC45A2Q9UMX9 530 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 TIMM9Q9Y5J7 89 aa10.65□□□□□ -0.7
C9orf3-221ENST00000489562 PUS1Q9Y606 427 aaKnown RBP eCLIP10.65□□□□□ -0.7
C9orf3-221ENST00000489562 FBN3Q75N90 2809 aa10.65□□□□□ -0.71
C9orf3-221ENST00000489562 IGHV3-35A0A0C4DH35 117 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 BOLA2-SMG1P6H3BVE0 249 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 YIF1AO95070 293 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 S100A7P31151 101 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 NKX2-5P52952 324 aaPredicted RBP10.64□□□□□ -0.71
C9orf3-221ENST00000489562 SLURP1P55000 103 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 ELLP55199 621 aaPredicted RBP10.64□□□□□ -0.71
C9orf3-221ENST00000489562 LAMTOR1Q6IAA8 161 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 DUX3Q96PT4 197 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 PSMG3Q9BT73 122 aaPredicted RBP10.64□□□□□ -0.71
C9orf3-221ENST00000489562 ZNF471Q9BX82 626 aaPredicted RBP10.64□□□□□ -0.71
C9orf3-221ENST00000489562 ZFAND3Q9H8U3 227 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 UFC1Q9Y3C8 167 aa10.64□□□□□ -0.71
C9orf3-221ENST00000489562 WI2-2373I1.2A0A1W2PRP0 233 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 A8MWP6 167 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 K7EMT4 169 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 IL4P05112 153 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 LINC00869P0C866 280 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 SYNJ2BPP57105 145 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PLP1P60201 277 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 B2MP61769 119 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PRR20EP86478 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PRR20CP86479 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PRR20DP86480 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PRR20BP86481 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PRR20AP86496 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 TOMM20LQ6UXN7 152 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 Q6ZRG5 221 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 S100A7AQ86SG5 101 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 SLC51BQ86UW2 128 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 STPG3Q8N7X2 389 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 HSD17B11Q8NBQ5 300 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 SPATA3Q8NHX4 192 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 STOML3Q8TAV4 291 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 RNF125Q96EQ8 232 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 ARV1Q9H2C2 271 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 DAZ1Q9NQZ3 744 aaKnown RBP10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PEMTQ9UBM1 199 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PFDN2Q9UHV9 154 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 PXMP4Q9Y6I8 212 aa10.63□□□□□ -0.71
C9orf3-221ENST00000489562 ZNF320A2RRD8 509 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 TSPAN15O95858 294 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 TPT1P13693 172 aaKnown RBP10.62□□□□□ -0.71
C9orf3-221ENST00000489562 ATP6V0CP27449 155 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 LYZP61626 148 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 SERF2P84101 59 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 MIC13Q5XKP0 118 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 OR2G3Q8NGZ4 309 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 DLX4Q92988 240 aaPredicted RBP10.62□□□□□ -0.71
C9orf3-221ENST00000489562 RCC1LQ96I51 464 aaKnown RBP10.62□□□□□ -0.71
C9orf3-221ENST00000489562 ZNF414Q96IQ9 312 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 PFDN5Q99471 154 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 RSG1Q9BU20 258 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 C20orf24Q9BUV8 137 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 SLC39A9Q9NUM3 307 aa10.62□□□□□ -0.71
C9orf3-221ENST00000489562 ELOA3CA0A087WX78 387 aaPredicted RBP10.61□□□□□ -0.71
C9orf3-221ENST00000489562 OVOL1O14753 267 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 HYPMO75409 117 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 GATA2P23769 480 aaPredicted RBP10.61□□□□□ -0.71
C9orf3-221ENST00000489562 BMI1P35226 326 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 EIF5AL1Q6IS14 154 aaKnown RBP10.61□□□□□ -0.71
C9orf3-221ENST00000489562 UNQ9165/PRO28630Q6UXU0 137 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 TMEM182Q6ZP80 229 aaPredicted RBP10.61□□□□□ -0.71
C9orf3-221ENST00000489562 BAP18Q8IXM2 172 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 LINC00482Q8N8I6 264 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 OR9G4Q8NGQ1 327 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 OR1L4Q8NGR5 311 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 MARC2Q969Z3 335 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 NARS2Q96I59 477 aaKnown RBP10.61□□□□□ -0.71
C9orf3-221ENST00000489562 METTL26Q96S19 204 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 RABAC1Q9UI14 185 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 RNF24Q9Y225 148 aa10.61□□□□□ -0.71
C9orf3-221ENST00000489562 NPPCP23582 126 aa10.6□□□□□ -0.71
C9orf3-221ENST00000489562 USF2Q15853 346 aaPredicted RBP10.6□□□□□ -0.71
C9orf3-221ENST00000489562 GATAD1Q8WUU5 269 aa10.6□□□□□ -0.71
C9orf3-221ENST00000489562 PBDC1Q9BVG4 233 aa10.6□□□□□ -0.71
C9orf3-221ENST00000489562 ELOVL1Q9BW60 279 aa10.6□□□□□ -0.71
C9orf3-221ENST00000489562 A0A1W2PS18 150 aa10.59□□□□□ -0.71
C9orf3-221ENST00000489562 COX7A2P2O60397 106 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms