RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 H2BFSP57053 126 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 SMCO1Q147U7 214 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 AARDQ4LEZ3 155 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 NMSQ5H8A3 153 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 TCF24Q7RTU0 167 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 ZBTB8BQ8NAP8 495 aaPredicted RBP9.06□□□□□ -0.96
SDC3-204ENST00000487984 OR2T35Q8NGX2 323 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 ST6GAL2Q96JF0 529 aa9.06□□□□□ -0.96
SDC3-204ENST00000487984 IGHV3-66A0A0C4DH42 116 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 CLN5O75503 358 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 DFFBO76075 338 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 CD5P06127 495 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 HNRNPCP07910 306 aaKnown RBP eCLIP9.05□□□□□ -0.96
SDC3-204ENST00000487984 OPRK1P41145 380 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 CMC4P56277 68 aaPredicted RBP9.05□□□□□ -0.96
SDC3-204ENST00000487984 SPCS3P61009 180 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 PAFAH1B2P68402 229 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 MLANAQ16655 118 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 BSXQ3C1V8 233 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 ZFP69Q49AA0 526 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 OR1S1Q8NH92 325 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 THAP6Q8TBB0 222 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 GPR146Q96CH1 333 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 MS4A6AQ9H2W1 248 aa9.05□□□□□ -0.96
SDC3-204ENST00000487984 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.05□□□□□ -0.96
SDC3-204ENST00000487984 FAM90A26D6RGX4 464 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 WRBO00258 174 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 MED6O75586 246 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 C1QBP02746 253 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 ATF4P18848 351 aaPredicted RBP9.04□□□□□ -0.96
SDC3-204ENST00000487984 PVALBP20472 110 aaPredicted RBP9.04□□□□□ -0.96
SDC3-204ENST00000487984 OR4X1Q8NH49 305 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 OR52E5Q8NH55 327 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 CSTL1Q9H114 145 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 CACNG5Q9UF02 275 aa9.04□□□□□ -0.96
SDC3-204ENST00000487984 NUPR2A6NF83 97 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 MPTX1A8MV57 137 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 DNASE2O00115 360 aaPredicted RBP9.03□□□□□ -0.96
SDC3-204ENST00000487984 IGKV1-17P01599 117 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 NUP62P37198 522 aaPredicted RBP9.03□□□□□ -0.96
SDC3-204ENST00000487984 NKX2-1P43699 371 aaPredicted RBP9.03□□□□□ -0.96
SDC3-204ENST00000487984 RPL11P62913 178 aaKnown RBP9.03□□□□□ -0.96
SDC3-204ENST00000487984 TIGITQ495A1 244 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 FAM24BQ8N5W8 94 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 PPP1R1CQ8WVI7 109 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 LINC00476Q8WZB0 136 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 HYLS1Q96M11 299 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 TMEM231Q9H6L2 316 aa9.03□□□□□ -0.96
SDC3-204ENST00000487984 TRAV2A0A0B4J234 112 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 SCGB2A1O75556 95 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 SCGB1D2O95969 90 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 NPPCP23582 126 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 CRYBB3P26998 211 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 HTR2BP41595 481 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 DEFB131AP59861 70 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 S100A10P60903 97 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 LEMD1Q68G75 181 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 CEMP1Q6PRD7 247 aaPredicted RBP9.02□□□□□ -0.97
SDC3-204ENST00000487984 TMEM217Q8N7C4 229 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 OR4D5Q8NGN0 318 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 GATAD1Q8WUU5 269 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 METTL26Q96S19 204 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 HEYLQ9NQ87 328 aaPredicted RBP9.02□□□□□ -0.97
SDC3-204ENST00000487984 RABAC1Q9UI14 185 aa9.02□□□□□ -0.97
SDC3-204ENST00000487984 RPS10-NUDT3A0A1W2PQS6 291 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 A0A1W2PS18 150 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 CEBPZOSA8MTT3 80 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 L7N2F9 121 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 PITX3O75364 302 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 NXPH3O95157 252 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 MPC2O95563 127 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 CA1P00915 261 aaPredicted RBP9.01□□□□□ -0.97
SDC3-204ENST00000487984 IGLC1P0CG04 106 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 SLC25A4P12235 298 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 C4BPBP20851 252 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 P2RY1P47900 373 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 VAMP2P63027 116 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 ID3Q02535 119 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 IL15RAQ13261 267 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 RAB32Q13637 225 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 LRRC37A5PQ49AS3 106 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 C2orf83Q53S99 150 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 PRSS54Q6PEW0 395 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 NOXA1Q86UR1 476 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 SLC24A4Q8NFF2 622 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 TMEM170AQ8WVE7 144 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 CIB3Q96Q77 187 aaPredicted RBP9.01□□□□□ -0.97
SDC3-204ENST00000487984 RARRES2Q99969 163 aa9.01□□□□□ -0.97
SDC3-204ENST00000487984 LSM5Q9Y4Y9 91 aaKnown RBP9.01□□□□□ -0.97
SDC3-204ENST00000487984 TRAV30A0A087WSZ9 112 aa9□□□□□ -0.97
SDC3-204ENST00000487984 E5RGE8 158 aa9□□□□□ -0.97
SDC3-204ENST00000487984 LY6G6CO95867 125 aa9□□□□□ -0.97
SDC3-204ENST00000487984 MBPP02686 304 aaPredicted RBP9□□□□□ -0.97
SDC3-204ENST00000487984 RND2P52198 227 aa9□□□□□ -0.97
SDC3-204ENST00000487984 INO80EQ8NBZ0 244 aaPredicted RBP9□□□□□ -0.97
SDC3-204ENST00000487984 STXBP6Q8NFX7 210 aa9□□□□□ -0.97
SDC3-204ENST00000487984 OR1S2Q8NGQ3 325 aa9□□□□□ -0.97
SDC3-204ENST00000487984 OR11H2Q8NH07 326 aa9□□□□□ -0.97
SDC3-204ENST00000487984 RNASEH2CQ8TDP1 164 aaKnown RBP9□□□□□ -0.97
SDC3-204ENST00000487984 RAB40CQ96S21 281 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms