RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FOXL2NBQ6ZUU3 175 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 TMEM190Q8WZ59 177 aa13.55□□□□□ -0.24
COL7A1-210ENST00000487017 MEGF9Q9H1U4 602 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 FNDC4Q9H6D8 234 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RBMY1BA6NDE4 496 aaKnown RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RBMY1EA6NEQ0 496 aaKnown RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RBMY1DP0C7P1 496 aaKnown RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RBMY1A1P0DJD3 496 aaKnown RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RBMY1CP0DJD4 496 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 SELLP14151 372 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 RHOGP84095 191 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 ORAOV1Q8WV07 137 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 LY96Q9Y6Y9 160 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 TRAV3A0A0B4J244 114 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 CD7P09564 240 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 Q0VFX4 171 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 C10orf55Q5SWW7 151 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 OR5A1Q8NGJ0 315 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 SPAG8Q99932 426 aaPredicted RBP13.54□□□□□ -0.24
COL7A1-210ENST00000487017 YAE1D1Q9NRH1 226 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 WFDC12Q8WWY7 111 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 SELENOKQ9Y6D0 94 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 TRAV21A0A0B4J279 112 aa13.54□□□□□ -0.24
COL7A1-210ENST00000487017 SLC25A48Q6ZT89 311 aaKnown RBP13.53□□□□□ -0.24
COL7A1-210ENST00000487017 METRNQ9UJH8 293 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 TP53BP1Q12888 1972 aaPredicted RBP13.53□□□□□ -0.24
COL7A1-210ENST00000487017 A6NNC1 897 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 F2Z2F3 143 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 LYNX1G3V0Z9 82 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 LYNX1P0DP58 116 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 PYY3Q5JQD4 70 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 ASCL4Q6XD76 172 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 JMJD8Q96S16 334 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 MS4A6AQ9H2W1 248 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 IFI27L1Q96BM0 104 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 VCX2Q9H322 139 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 CEP290O15078 2479 aa13.53□□□□□ -0.24
COL7A1-210ENST00000487017 LILRA1O75019 489 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 PPIFP30405 207 aaKnown RBP13.52□□□□□ -0.24
COL7A1-210ENST00000487017 LINC00473A8K010 186 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 MLNRO43193 412 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 IGKCP01834 107 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 ORMDL2Q53FV1 153 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 COLCA1Q6ZS62 124 aa13.52□□□□□ -0.24
COL7A1-210ENST00000487017 LDLRAD2Q5SZI1 272 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 LHFPL4Q7Z7J7 247 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 SDK2Q58EX2 2172 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 ARHGEF17Q96PE2 2063 aaPredicted RBP13.52□□□□□ -0.25
COL7A1-210ENST00000487017 B3GALT5-AS1P59052 145 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 TMEM256Q8N2U0 113 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 EVI2AP22794 236 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 TMEM200BQ69YZ2 307 aa13.52□□□□□ -0.25
COL7A1-210ENST00000487017 MBNL3Q9NUK0 354 aaKnown RBP13.52□□□□□ -0.25
COL7A1-210ENST00000487017 IGHV2-26A0A0B4J1V2 119 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 A0A0G2JRQ6 117 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 E9PQ18 207 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 GZMBP10144 247 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 NTF4P34130 210 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 C11orf44Q8N8P7 122 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 MST1LQ2TV78 715 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 VKORC1Q9BQB6 163 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 SEC11AP67812 179 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 ZNF585BQ52M93 769 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 STHQ8IWL8 128 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 CYSLTR1Q9Y271 337 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 A0A0U1RRA0 63 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 THBDP07204 575 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 TRGV9Q99603 122 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 PSG1P11464 419 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 HSD52Q0P140 79 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 TMEM167AQ8TBQ9 72 aa13.51□□□□□ -0.25
COL7A1-210ENST00000487017 SLC25A39Q9BZJ4 359 aaPredicted RBP13.51□□□□□ -0.25
COL7A1-210ENST00000487017 VWA8A3KMH1 1905 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 CD59P13987 128 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 IFI27P40305 119 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-210ENST00000487017 CHTOPQ9Y3Y2 248 aaKnown RBP13.5□□□□□ -0.25
COL7A1-210ENST00000487017 TRAV8-2A0A0B4J237 113 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 C15orf62A8K5M9 175 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 PMS2P5A8MQ11 134 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 NDUFS6O75380 124 aaKnown RBP13.5□□□□□ -0.25
COL7A1-210ENST00000487017 TCRAP04437 139 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 IGHV1-8P0DP01 117 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 FAM90A2PQ658T7 463 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 DPH3P1Q9H4G8 78 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 RLFQ13129 1914 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 MYOD1P15172 320 aa13.5□□□□□ -0.25
COL7A1-210ENST00000487017 SRD5A1P18405 259 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 SCRT1Q9BWW7 348 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 SLC25A2Q9BXI2 301 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 SLC25A15Q9Y619 301 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 NPIPB5A8MRT5 1133 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 PAX2Q02962 417 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 EXOC3-AS1Q8N2X6 119 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 CRIM1Q9NZV1 1036 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 PEMTQ9UBM1 199 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 C3orf36Q3SXR2 165 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 SPSB3Q6PJ21 355 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 Q6ZRM9 215 aa13.49□□□□□ -0.25
COL7A1-210ENST00000487017 IGHV3-64A0A075B6Q5 118 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms