RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 SIGLEC15Q6ZMC9 328 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 LRTM2Q8N967 370 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 Q8NAQ8 132 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 OR51G1Q8NGK1 321 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 MCFD2Q8NI22 146 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 NPIPB3Q92617 1050 aa8.84□□□□□ -0.99
SQSTM1-207ENST00000481335 GIG44P09565 113 aaPredicted RBP8.83□□□□□ -1
SQSTM1-207ENST00000481335 KLF9Q13886 244 aaPredicted RBP8.83□□□□□ -1
SQSTM1-207ENST00000481335 LYZL2Q7Z4W2 148 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 C2CD4CQ8TF44 421 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 TRIM63Q969Q1 353 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 RNF125Q96EQ8 232 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 ACY3Q96HD9 319 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 SLC35E1Q96K37 410 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 SLC25A21Q9BQT8 299 aaPredicted RBP8.83□□□□□ -1
SQSTM1-207ENST00000481335 FBXL17Q9UF56 701 aa8.83□□□□□ -1
SQSTM1-207ENST00000481335 FRAS1Q86XX4 4008 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 PITX3O75364 302 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 MED6O75586 246 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 NXPH3O95157 252 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 CFDP00746 253 aaPredicted RBP8.82□□□□□ -1
SQSTM1-207ENST00000481335 PSG1P11464 419 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 C4BPBP20851 252 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 NKX2-1P43699 371 aaPredicted RBP8.82□□□□□ -1
SQSTM1-207ENST00000481335 NANOS2P60321 138 aaKnown RBP8.82□□□□□ -1
SQSTM1-207ENST00000481335 RAB11AP62491 216 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 PSMG4Q5JS54 123 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 ACTL10Q5JWF8 245 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 C1orf194Q5T5A4 169 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 SAMD13Q5VXD3 122 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 CENPSQ8N2Z9 138 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 TOMM5Q8N4H5 51 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 OR1S1Q8NH92 325 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 CIB3Q96Q77 187 aaPredicted RBP8.82□□□□□ -1
SQSTM1-207ENST00000481335 RAB40CQ96S21 281 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 RBKSQ9H477 322 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 TMED3Q9Y3Q3 217 aa8.82□□□□□ -1
SQSTM1-207ENST00000481335 ZFP92A6NM28 416 aa8.81□□□□□ -1
SQSTM1-207ENST00000481335 S100A5P33763 92 aa8.81□□□□□ -1
SQSTM1-207ENST00000481335 RPP30P78346 268 aaKnown RBP8.81□□□□□ -1
SQSTM1-207ENST00000481335 CSNK1G2-AS1Q8NCQ2 148 aa8.81□□□□□ -1
SQSTM1-207ENST00000481335 TBC1D24Q9ULP9 559 aa8.81□□□□□ -1
SQSTM1-207ENST00000481335 IGHV4-28A0A0C4DH34 117 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 KNCNA6PVL3 124 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 HLA-DRB4P13762 266 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 S100A7P31151 101 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 UBE2MP61081 183 aaKnown RBP8.8□□□□□ -1
SQSTM1-207ENST00000481335 GAMTQ14353 236 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 PYDC2Q56P42 97 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 SPATA31B1PQ5VZV4 182 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 CLUHP3Q96NS8 147 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 TRGV9Q99603 122 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 PRR13Q9NZ81 148 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 SLC45A2Q9UMX9 530 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 V9GYH0 126 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 HLA-DRB4X5D2U9 266 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 X6R8D5 127 aa8.8□□□□□ -1
SQSTM1-207ENST00000481335 TRAV10A0A0B4J240 114 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 SNRPGP15A8MWD9 76 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 H3BMM0 161 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 ID1P41134 155 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 PSMB3P49720 205 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 TMED4Q7Z7H5 227 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 NEU1Q99519 415 aa8.79□□□□□ -1
SQSTM1-207ENST00000481335 IGKV1D-37A0A075B6S9 117 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 ZNF701M0R085 212 aaPredicted RBP8.78□□□□□ -1
SQSTM1-207ENST00000481335 DEFB4AO15263 64 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 SFT2D2O95562 160 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 RBMY1A1P0DJD3 496 aaKnown RBP8.78□□□□□ -1
SQSTM1-207ENST00000481335 RBMY1CP0DJD4 496 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 VAMP1P23763 118 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 MEOX2P50222 304 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 RBMY1FQ15415 496 aaKnown RBP8.78□□□□□ -1
SQSTM1-207ENST00000481335 ZNF79Q15937 498 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 FOXI2Q6ZQN5 318 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 THAP8Q8NA92 274 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 PBDC1Q9BVG4 233 aa8.78□□□□□ -1
SQSTM1-207ENST00000481335 TEX48A0A1B0GUV7 120 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 TMEM189A5PLL7 270 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 SMIM9A6NGZ8 99 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 ISLRO14498 428 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 SYNGR2O43760 224 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 HLA-DMBP28068 263 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 LYZP61626 148 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 ZNF90Q03938 601 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 SPANXN2Q5MJ10 180 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 GGNBP1Q5YKI7 109 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 ZNF705AQ6ZN79 300 aaPredicted RBP8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 CCDC190Q86UF4 302 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 RNF126Q9BV68 326 aa8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 SAV1Q9H4B6 383 aaPredicted RBP8.77□□□□□ -1.01
SQSTM1-207ENST00000481335 DNAH6Q9C0G6 4158 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 ELOA3CA0A087WX78 387 aaPredicted RBP8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 NAP1L6A6NFF2 107 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 IGLL5B9A064 214 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 PRSS46E5RG02 174 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 SOCS3O14543 225 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 AMBPP02760 352 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 PAX9P55771 341 aa8.76□□□□□ -1.01
SQSTM1-207ENST00000481335 PPP1R1AQ13522 171 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms