RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 GLMPQ8WWB7 406 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 CIB3Q96Q77 187 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-223ENST00000476519 SRRQ9GZT4 340 aa8.84□□□□□ -0.99
SYNE1-223ENST00000476519 ALMS1Q8TCU4 4167 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 HYDINQ4G0P3 5121 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 SNRPGP15A8MWD9 76 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 CA1P00915 261 aaPredicted RBP8.83□□□□□ -1
SYNE1-223ENST00000476519 EWSR1Q01844 656 aaKnown RBP eCLIP8.83□□□□□ -1
SYNE1-223ENST00000476519 DHRS2Q13268 280 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 PPP1R1AQ13522 171 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 USF2Q15853 346 aaPredicted RBP8.83□□□□□ -1
SYNE1-223ENST00000476519 MORN3Q6PF18 240 aaPredicted RBP8.83□□□□□ -1
SYNE1-223ENST00000476519 CENPSQ8N2Z9 138 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 SLC35E1Q96K37 410 aa8.83□□□□□ -1
SYNE1-223ENST00000476519 KLK5Q9Y337 293 aaPredicted RBP8.83□□□□□ -1
SYNE1-223ENST00000476519 ZFP92A6NM28 416 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 ZNF688P0C7X2 276 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 SPP1P10451 314 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 INPP1P49441 399 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 SNRPD3P62318 126 aaKnown RBP8.82□□□□□ -1
SYNE1-223ENST00000476519 OR8G2PQ6IF36 304 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 TRPT1Q86TN4 253 aaKnown RBP8.82□□□□□ -1
SYNE1-223ENST00000476519 RNF125Q96EQ8 232 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 NRN1Q9NPD7 142 aa8.82□□□□□ -1
SYNE1-223ENST00000476519 SYNGR2O43760 224 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 CFDP00746 253 aaPredicted RBP8.81□□□□□ -1
SYNE1-223ENST00000476519 PMS2P11Q13670 270 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 BAK1Q16611 211 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 C1orf194Q5T5A4 169 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 TRIQKQ629K1 86 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 SIGLEC15Q6ZMC9 328 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 RAB40CQ96S21 281 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 TRGV9Q99603 122 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 MFFQ9GZY8 342 aa8.81□□□□□ -1
SYNE1-223ENST00000476519 C11orf68Q9H3H3 251 aaKnown RBP8.81□□□□□ -1
SYNE1-223ENST00000476519 IGKV1D-37A0A075B6S9 117 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 C9orf170A2RU37 121 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 KNCNA6PVL3 124 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 CENPXA8MT69 81 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 NDUFB6O95139 128 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 HOXB5P09067 269 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 GIG44P09565 113 aaPredicted RBP8.8□□□□□ -1
SYNE1-223ENST00000476519 ID3Q02535 119 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 ZNF90Q03938 601 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 CNPY1Q3B7I2 92 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 ACTL10Q5JWF8 245 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 GGNBP1Q5YKI7 109 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 THAP8Q8NA92 274 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 C11orf45Q8TAV5 145 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 C7orf50Q9BRJ6 194 aaKnown RBP8.8□□□□□ -1
SYNE1-223ENST00000476519 NDUFA13Q9P0J0 144 aa8.8□□□□□ -1
SYNE1-223ENST00000476519 EPPK1P58107 5090 aaKnown RBP8.8□□□□□ -1
SYNE1-223ENST00000476519 IAPPP10997 89 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 NUTF2P61970 127 aaKnown RBP8.79□□□□□ -1
SYNE1-223ENST00000476519 PSMG4Q5JS54 123 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 COQ8AQ8NI60 647 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 PHLDA1Q8WV24 401 aaPredicted RBP8.79□□□□□ -1
SYNE1-223ENST00000476519 PBDC1Q9BVG4 233 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 MAGT1Q9H0U3 335 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 FBXL17Q9UF56 701 aa8.79□□□□□ -1
SYNE1-223ENST00000476519 PAIP2BQ9ULR5 123 aaKnown RBP8.79□□□□□ -1
SYNE1-223ENST00000476519 ZNF705EA8MWA4 302 aaPredicted RBP8.78□□□□□ -1
SYNE1-223ENST00000476519 WRBO00258 174 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 IFNA21P01568 189 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 S100A7P31151 101 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 ID1P41134 155 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 NKX2-1P43699 371 aaPredicted RBP8.78□□□□□ -1
SYNE1-223ENST00000476519 LINC00476Q8WZB0 136 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 SDHCQ99643 169 aaPredicted RBP8.78□□□□□ -1
SYNE1-223ENST00000476519 C1QTNF4Q9BXJ3 329 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 HRH4Q9H3N8 390 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 SLC45A2Q9UMX9 530 aa8.78□□□□□ -1
SYNE1-223ENST00000476519 STRAPQ9Y3F4 350 aaKnown RBP8.78□□□□□ -1
SYNE1-223ENST00000476519 IGKV1OR2-108A0A075B7D4 117 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 PRSS46E5RG02 174 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 H3BMM0 161 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 OR4E1P0C645 316 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 MIFP14174 115 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 OR2F1Q13607 317 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 SPANXN5Q5MJ07 72 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 SAMD13Q5VXD3 122 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 CSNK1G2-AS1Q8NCQ2 148 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 FLVCR2Q9UPI3 526 aa8.77□□□□□ -1.01
SYNE1-223ENST00000476519 LINC00854A0A1B0GVQ3 168 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 ADAP1O75689 374 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 LY6G6CO95867 125 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 IL7P13232 177 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 NANOS2P60321 138 aaKnown RBP8.76□□□□□ -1.01
SYNE1-223ENST00000476519 LYZP61626 148 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 C4orf46Q504U0 113 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 OR8I2Q8N0Y5 310 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 Q8NAQ8 132 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 PPP1R14BQ96C90 147 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 SMIM8Q96KF7 97 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 TBC1D24Q9ULP9 559 aa8.76□□□□□ -1.01
SYNE1-223ENST00000476519 BIRC6Q9NR09 4857 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 HLA-DRB4P13762 266 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 ANXA7P20073 488 aaKnown RBP8.75□□□□□ -1.01
SYNE1-223ENST00000476519 C4BPBP20851 252 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 PSMB3P49720 205 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms