RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 FAM172AQ8WUF8 416 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 SLAMF6Q96DU3 332 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 TRABDQ9H4I3 376 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 HS3ST2Q9Y278 367 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 UTP11Q9Y3A2 253 aaKnown RBP1.77□□□□□ -2.13
VPS50-212ENST00000476413 SOX21Q9Y651 276 aaPredicted RBP1.77□□□□□ -2.13
VPS50-212ENST00000476413 RIMBP3CA6NJZ7 1639 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 RIMBP3BA6NNM3 1639 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 RIMBP3Q9UFD9 1639 aa1.77□□□□□ -2.13
VPS50-212ENST00000476413 BRS3P32247 399 aa1.76□□□□□ -2.13
VPS50-212ENST00000476413 RRN3P1Q2M238 152 aa1.76□□□□□ -2.13
VPS50-212ENST00000476413 BRMS1LQ5PSV4 323 aa1.76□□□□□ -2.13
VPS50-212ENST00000476413 LYRM7Q5U5X0 104 aa1.76□□□□□ -2.13
VPS50-212ENST00000476413 NHP2Q9NX24 153 aaKnown RBP1.76□□□□□ -2.13
VPS50-212ENST00000476413 CEP192Q8TEP8 1941 aa1.76□□□□□ -2.13
VPS50-212ENST00000476413 HMGB3O15347 200 aaKnown RBP1.75□□□□□ -2.13
VPS50-212ENST00000476413 DEFB113Q30KQ7 82 aa1.75□□□□□ -2.13
VPS50-212ENST00000476413 SLC35A3Q9Y2D2 325 aa1.75□□□□□ -2.13
VPS50-212ENST00000476413 TAF1LQ8IZX4 1826 aa1.75□□□□□ -2.13
VPS50-212ENST00000476413 DLG5Q8TDM6 1919 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 TRAV12-1A0A0B4J245 112 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 RHOBP62745 196 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 DYNLT1P63172 113 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 RHOGP84095 191 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 ESRGQ1W209 222 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 OR4C6Q8NH72 309 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 CEP19Q96LK0 163 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 TMEM126AQ9H061 195 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 COL6A6A6NMZ7 2263 aa1.74□□□□□ -2.13
VPS50-212ENST00000476413 SULT1B1O43704 296 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 EIF5AP63241 154 aaKnown RBP1.73□□□□□ -2.13
VPS50-212ENST00000476413 Q8IYB0 196 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 EXOC3-AS1Q8N2X6 119 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 PRADC1Q9BSG0 188 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 IMUPQ9GZP8 106 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 BCL2L10Q9HD36 194 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 CRCT1Q9UGL9 99 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 MIA2Q96PC5 1412 aa1.73□□□□□ -2.13
VPS50-212ENST00000476413 SCN8AQ9UQD0 1980 aa1.72□□□□□ -2.13
VPS50-212ENST00000476413 ARL14EPLP0DKL9 152 aa1.72□□□□□ -2.13
VPS50-212ENST00000476413 SRP14P37108 136 aaKnown RBP1.72□□□□□ -2.13
VPS50-212ENST00000476413 KRR1Q13601 381 aaKnown RBP1.72□□□□□ -2.13
VPS50-212ENST00000476413 SFT2D1Q8WV19 159 aa1.72□□□□□ -2.13
VPS50-212ENST00000476413 M0R378 163 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 TAX1BP3O14907 124 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 IFNA7P01567 189 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 RAB4BP61018 213 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 CNBPP62633 177 aaKnown RBP1.71□□□□□ -2.14
VPS50-212ENST00000476413 OR2T10Q8NGZ9 312 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 MED29Q9NX70 200 aa1.71□□□□□ -2.14
VPS50-212ENST00000476413 NCALDP61601 193 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 SOSTDC1Q6X4U4 206 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 PDZD9Q8IXQ8 264 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 SLC30A7Q8NEW0 376 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 PRNDQ9UKY0 176 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 PYCARDQ9ULZ3 195 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 UBR2Q8IWV8 1755 aa1.7□□□□□ -2.14
VPS50-212ENST00000476413 DIDO1Q9BTC0 2240 aaKnown RBP1.69□□□□□ -2.14
VPS50-212ENST00000476413 PROSCO94903 275 aa1.69□□□□□ -2.14
VPS50-212ENST00000476413 GADD45GO95257 159 aa1.69□□□□□ -2.14
VPS50-212ENST00000476413 C1orf137Q5JT78 98 aa1.69□□□□□ -2.14
VPS50-212ENST00000476413 C22orf39Q6P5X5 142 aa1.69□□□□□ -2.14
VPS50-212ENST00000476413 ZNF418Q8TF45 676 aaPredicted RBP1.69□□□□□ -2.14
VPS50-212ENST00000476413 SNURFQ9Y675 71 aa1.69□□□□□ -2.14
VPS50-212ENST00000476413 EIF3AQ14152 1382 aaKnown RBP1.69□□□□□ -2.14
VPS50-212ENST00000476413 DOCK4Q8N1I0 1966 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 POLEQ07864 2286 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 SCN3AQ9NY46 2000 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 LOC110117498A0A087WWA1 95 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 ZNF93P35789 620 aaPredicted RBP1.68□□□□□ -2.14
VPS50-212ENST00000476413 GNG5P63218 68 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 LINC00301Q8NCQ3 95 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 AP3S1Q92572 193 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 MYH10P35580 1976 aa1.68□□□□□ -2.14
VPS50-212ENST00000476413 TRBV6-8A0A0A6YYG3 113 aa1.67□□□□□ -2.14
VPS50-212ENST00000476413 HYPMO75409 117 aa1.67□□□□□ -2.14
VPS50-212ENST00000476413 ATG12O94817 140 aa1.67□□□□□ -2.14
VPS50-212ENST00000476413 LYG2Q86SG7 212 aa1.67□□□□□ -2.14
VPS50-212ENST00000476413 CCDC94Q9BW85 323 aaPredicted RBP1.67□□□□□ -2.14
VPS50-212ENST00000476413 STOML2Q9UJZ1 356 aa1.67□□□□□ -2.14
VPS50-212ENST00000476413 CACNA1BQ00975 2339 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 TRGV10A0A0A0MS01 117 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 NDUFB3O43676 98 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 TIMM17BO60830 172 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 RPL19P84098 196 aaKnown RBP1.66□□□□□ -2.14
VPS50-212ENST00000476413 PLCXD2Q0VAA5 305 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 YPEL2Q96QA6 119 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 C14orf132Q9NPU4 83 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 MYH2Q9UKX2 1941 aa1.66□□□□□ -2.14
VPS50-212ENST00000476413 TNRC6AQ8NDV7 1962 aaKnown RBP1.65□□□□□ -2.14
VPS50-212ENST00000476413 A0A087WX48 190 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 TMEM238C9JI98 176 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 TMEM256-PLSCR3K7ERE1 68 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 GEMIN2O14893 280 aaKnown RBP1.65□□□□□ -2.15
VPS50-212ENST00000476413 CST8O60676 142 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 IL9P15248 144 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 KLK9Q9UKQ9 250 aa1.65□□□□□ -2.15
VPS50-212ENST00000476413 FLG2Q5D862 2391 aaPredicted RBP1.65□□□□□ -2.15
VPS50-212ENST00000476413 NDUFC2O95298 119 aa1.64□□□□□ -2.15
VPS50-212ENST00000476413 IFNA1P01562 189 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms