RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ACTL10Q5JWF8 245 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 TRPT1Q86TN4 253 aaKnown RBP11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 PHLDA1Q8WV24 401 aaPredicted RBP11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 PBDC1Q9BVG4 233 aa11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 KLK5Q9Y337 293 aaPredicted RBP11.48□□□□□ -0.57
CCDC88B-205ENST00000472524 KMT2AQ03164 3969 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 HOXB5P09067 269 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 AP2S1P53680 142 aaPredicted RBP11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 NANOS2P60321 138 aaKnown RBP11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 GAMTQ14353 236 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 SPANXN2Q5MJ10 180 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 SIGLEC15Q6ZMC9 328 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 CENPSQ8N2Z9 138 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 LRTM2Q8N967 370 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 DEDD2Q8WXF8 326 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 RNF125Q96EQ8 232 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 KRTAP17-1Q9BYP8 105 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 C11orf68Q9H3H3 251 aaKnown RBP11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 FBXL17Q9UF56 701 aa11.47□□□□□ -0.57
CCDC88B-205ENST00000472524 BUB3O43684 328 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 C4BPBP20851 252 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 GPX4P36969 197 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 INPP1P49441 399 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 ATP5IP56385 69 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 RAB11AP62491 216 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 ZNF90Q03938 601 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 SRRQ9GZT4 340 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 MAGT1Q9H0U3 335 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 NRN1Q9NPD7 142 aa11.46□□□□□ -0.57
CCDC88B-205ENST00000472524 IGKV1D-37A0A075B6S9 117 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 FAM90A26D6RGX4 464 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 MED6O75586 246 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 GIG44P09565 113 aaPredicted RBP11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 SPP1P10451 314 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 SLC25A6P12236 298 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 LYZP61626 148 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 OR2F1Q13607 317 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 TRIQKQ629K1 86 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 MORN3Q6PF18 240 aaPredicted RBP11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 RPP25LQ8N5L8 163 aaKnown RBP11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 C11orf45Q8TAV5 145 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 TMED3Q9Y3Q3 217 aa11.45□□□□□ -0.58
CCDC88B-205ENST00000472524 ZNF701M0R085 212 aaPredicted RBP11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 WRBO00258 174 aa11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 SNRPD3P62318 126 aaKnown RBP11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 GGNBP1Q5YKI7 109 aa11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 RAB40CQ96S21 281 aa11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 MFFQ9GZY8 342 aa11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 CLEC5AQ9NY25 188 aa11.44□□□□□ -0.58
CCDC88B-205ENST00000472524 FRAS1Q86XX4 4008 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 LINC00854A0A1B0GVQ3 168 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 SYNGR2O43760 224 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 NUP62P37198 522 aaPredicted RBP11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 BAK1Q16611 211 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 TMEM41BQ5BJD5 291 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 OR8G2PQ6IF36 304 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 Q8NAQ8 132 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 PPP1R14BQ96C90 147 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 CIB3Q96Q77 187 aaPredicted RBP11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 PFDN2Q9UHV9 154 aa11.43□□□□□ -0.58
CCDC88B-205ENST00000472524 IGHV4-28A0A0C4DH34 117 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 C9orf170A2RU37 121 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 H3BP45 60 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 FABP1P07148 127 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 UBE2MP61081 183 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 RPP30P78346 268 aaKnown RBP11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 TRGV9Q99603 122 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 FLVCR2Q9UPI3 526 aa11.42□□□□□ -0.58
CCDC88B-205ENST00000472524 IGKV1OR2-108A0A075B7D4 117 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 NAP1L6A6NFF2 107 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 SNRPGP15A8MWD9 76 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 DEDDO75618 318 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 ADAP1O75689 374 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 NDUFB6O95139 128 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 SPANXN5Q5MJ07 72 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 THAP8Q8NA92 274 aa11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 SEPSECSQ9HD40 501 aaKnown RBP11.41□□□□□ -0.58
CCDC88B-205ENST00000472524 ZNF705EA8MWA4 302 aaPredicted RBP11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 RBMY1A1P0DJD3 496 aaKnown RBP11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 RBMY1CP0DJD4 496 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 MIFP14174 115 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 DEFB1P60022 68 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 RBMY1FQ15415 496 aaKnown RBP11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 GSG1LQ6UXU4 331 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 LINC00052Q96N35 136 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 WDR12Q9GZL7 423 aaKnown RBP11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 TBC1D24Q9ULP9 559 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 X6R8D5 127 aa11.4□□□□□ -0.58
CCDC88B-205ENST00000472524 PRSS46E5RG02 174 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 H3BMM0 161 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 IGKV3-20P01619 116 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 NKX2-1P43699 371 aaPredicted RBP11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 AKR1C1Q04828 323 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 CSNK1G2-AS1Q8NCQ2 148 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 COQ8AQ8NI60 647 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 SDHCQ99643 169 aaPredicted RBP11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 XCL2Q9UBD3 114 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 STRAPQ9Y3F4 350 aaKnown RBP11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 DNAH6Q9C0G6 4158 aa11.39□□□□□ -0.59
CCDC88B-205ENST00000472524 HERC2O95714 4834 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms