RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 TMEM8BA6NDV4 472 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 IGHG3P01860 377 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TNFRSF14Q92956 283 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 LEPROTO15243 131 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DEFB130BP0DP73 79 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DEFB130AP0DP74 79 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CA7P43166 264 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 SPACA3Q8IXA5 215 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TRAV8-1A0A0A6YYK1 113 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ATP5G3P48201 142 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CMC4P56277 68 aaPredicted RBP11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PRR31Q5SQ13 230 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CD55P08174 381 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PAX8Q06710 450 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 OCIAD2Q56VL3 154 aa11.07□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FABP5P3A8MUU1 101 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FSTP19883 344 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 KLRD1Q13241 179 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ZNF837Q96EG3 531 aaPredicted RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 NHP2Q9NX24 153 aaKnown RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CCL1P22362 96 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RPL15P61313 204 aaKnown RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PUSL1Q8N0Z8 303 aaKnown RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 SAXO1Q8IYX7 474 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 C8orf31Q8N9H6 132 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FMC1Q96HJ9 113 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 WNT2P09544 360 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 LIMS1P48059 325 aa11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DUSP14O95147 198 aaKnown RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RPP21Q9H633 154 aaKnown RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FNDC4Q9H6D8 234 aaPredicted RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ZNF362Q5T0B9 420 aaPredicted RBP11.06□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 GNLYP22749 145 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RCHY1Q96PM5 261 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DLEC1Q9Y238 1755 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TMEM187Q14656 261 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ZNF660Q6AZW8 331 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DEFB105AQ8NG35 78 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 DSCR8Q96T75 97 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ERVH48-1M5A8F1 160 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RAMP3O60896 148 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CFHR3Q02985 330 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 C8orf82Q6P1X6 216 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ZNF474Q6S9Z5 364 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 GLI3P10071 1580 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PCDH15Q96QU1 1955 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 C4orf51C9J302 202 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ANKRD39Q53RE8 183 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RNF114Q9Y508 228 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 BRCA1P38398 1863 aaKnown RBP11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 SAA2-SAA4A0A096LPE2 208 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 SAA2P0DJI9 122 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ADMP35318 185 aa11.05□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 INAFM2P0DMQ5 153 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 SIGLEC15Q6ZMC9 328 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 GTSF1LQ9H1H1 148 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 HCFC1P51610 2035 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TIMM23O14925 209 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RCC1LQ96I51 464 aaKnown RBP11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TIMM17AQ99595 171 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 COL22A1Q8NFW1 1626 aaPredicted RBP11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 H2BFSP57053 126 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CD300EQ496F6 205 aaPredicted RBP11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 UBR3Q6ZT12 1888 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM110DQ8TAY7 271 aaPredicted RBP11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 MEGF9Q9H1U4 602 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 LSM4Q9Y4Z0 139 aaKnown RBP11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 UCP3P55916 312 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 GGACTQ9BVM4 153 aa11.04□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 TRBV9A0A0B4J1U6 114 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A10PA6NDY2 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A18PA6NE21 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A16PA6NEW6 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A20PA6NIJ5 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A8PA6NJQ4 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A7PA6NKC0 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A22PA8MWA6 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A12PA8MX19 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A5PA8MXJ8 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A23PA8MXZ1 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A15PP0C7V4 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A13PP0C7W8 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A14PP0C7W9 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM90A24PP0C7X0 464 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 CHCHD2Q9Y6H1 151 aaPredicted RBP11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PARP14Q460N5 1801 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 PYYP10082 97 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ZFAND6Q6FIF0 208 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RNF125Q96EQ8 232 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 C1orf43Q9BWL3 253 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ABCA2Q9BZC7 2435 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 OR10W1Q8NGF6 305 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 ERG28Q9UKR5 140 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 A0A0G2JK05 382 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 A0A1W2PPI3 338 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 IGKV2-40A0A087WW87 121 aaPredicted RBP11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 LY6HO94772 140 aa11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 IGKV2D-40P01614 121 aaPredicted RBP11.03□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 FAM166AQ6J272 317 aa11.02□□□□□ -0.64
NPHP3-ACAD11-201ENST00000471702 RMI2Q96E14 147 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms