RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NRN1Q9NPD7 142 aa12.79□□□□□ -0.36
COL7A1-206ENST00000466591 CLEC5AQ9NY25 188 aa12.79□□□□□ -0.36
COL7A1-206ENST00000466591 TBC1D24Q9ULP9 559 aa12.79□□□□□ -0.36
COL7A1-206ENST00000466591 HYDINQ4G0P3 5121 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 EPPK1P58107 5090 aaKnown RBP12.78□□□□□ -0.36
COL7A1-206ENST00000466591 IGHV4-28A0A0C4DH34 117 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 C11orf94C9JXX5 98 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 PSG1P11464 419 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 TNFSF8P32971 234 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 TOMM5Q8N4H5 51 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 GLMPQ8WWB7 406 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 RNF125Q96EQ8 232 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 RAB40CQ96S21 281 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 HSPB7Q9UBY9 170 aa12.78□□□□□ -0.36
COL7A1-206ENST00000466591 H3BMQ9 156 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 DEDDO75618 318 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 ID1P41134 155 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 INPP1P49441 399 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 ATP5IP56385 69 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-206ENST00000466591 TCTAP57738 103 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 LYZP61626 148 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 COQ8AQ8NI60 647 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 LINC00052Q96N35 136 aa12.77□□□□□ -0.37
COL7A1-206ENST00000466591 PLECQ15149 4684 aaKnown RBP12.76□□□□□ -0.37
COL7A1-206ENST00000466591 FAM90A26D6RGX4 464 aa12.76□□□□□ -0.37
COL7A1-206ENST00000466591 C4BPBP20851 252 aa12.76□□□□□ -0.37
COL7A1-206ENST00000466591 RPP30P78346 268 aaKnown RBP12.76□□□□□ -0.37
COL7A1-206ENST00000466591 RPP25LQ8N5L8 163 aaKnown RBP12.76□□□□□ -0.37
COL7A1-206ENST00000466591 SLIRPQ9GZT3 109 aaKnown RBP12.76□□□□□ -0.37
COL7A1-206ENST00000466591 U3KQE9 123 aa12.76□□□□□ -0.37
COL7A1-206ENST00000466591 DUXBA0A1W2PPF3 345 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 BUB3O43684 328 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 MED6O75586 246 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 IAPPP10997 89 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 HLA-DMBP28068 263 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 GPX4P36969 197 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-206ENST00000466591 TMEM128Q5BJH2 165 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 Q8NAQ8 132 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 TMEM170AQ8WVE7 144 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 HRH4Q9H3N8 390 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 XCL2Q9UBD3 114 aa12.75□□□□□ -0.37
COL7A1-206ENST00000466591 TRAV10A0A0B4J240 114 aa12.74□□□□□ -0.37
COL7A1-206ENST00000466591 SNRPGP15A8MWD9 76 aa12.74□□□□□ -0.37
COL7A1-206ENST00000466591 IGKV3-20P01619 116 aa12.74□□□□□ -0.37
COL7A1-206ENST00000466591 SUPT4H1P63272 117 aaKnown RBP12.74□□□□□ -0.37
COL7A1-206ENST00000466591 OR2F1Q13607 317 aa12.74□□□□□ -0.37
COL7A1-206ENST00000466591 OR8G2PQ6IF36 304 aa12.74□□□□□ -0.37
COL7A1-206ENST00000466591 CIB3Q96Q77 187 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-206ENST00000466591 SEPSECSQ9HD40 501 aaKnown RBP12.73□□□□□ -0.37
COL7A1-206ENST00000466591 IGHV3OR16-12A0A075B7B8 117 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 ZNF705EA8MWA4 302 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-206ENST00000466591 RBMY1A1P0DJD3 496 aaKnown RBP12.72□□□□□ -0.37
COL7A1-206ENST00000466591 RBMY1CP0DJD4 496 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 S100A7P31151 101 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 ZNF90Q03938 601 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 GAMTQ14353 236 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 RBMY1FQ15415 496 aaKnown RBP12.72□□□□□ -0.37
COL7A1-206ENST00000466591 OR8I2Q8N0Y5 310 aa12.72□□□□□ -0.37
COL7A1-206ENST00000466591 SLC25A21Q9BQT8 299 aaPredicted RBP12.72□□□□□ -0.37
COL7A1-206ENST00000466591 BIRC6Q9NR09 4857 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 NKX2-1P43699 371 aaPredicted RBP12.71□□□□□ -0.37
COL7A1-206ENST00000466591 AKR1C1Q04828 323 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 EBLN2Q6P2I7 272 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 Q6ZTC4 211 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 OR4B1Q8NGF8 309 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 TMED3Q9Y3Q3 217 aa12.71□□□□□ -0.37
COL7A1-206ENST00000466591 H3BMM0 161 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 WRBO00258 174 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 HOXB5P09067 269 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 GIG44P09565 113 aaPredicted RBP12.7□□□□□ -0.38
COL7A1-206ENST00000466591 PSMB3P49720 205 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 EMP1P54849 157 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 SAMD13Q5VXD3 122 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 MAGT1Q9H0U3 335 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 X6R8D5 127 aa12.7□□□□□ -0.38
COL7A1-206ENST00000466591 CFDP00746 253 aaPredicted RBP12.69□□□□□ -0.38
COL7A1-206ENST00000466591 HLA-DRB4P13762 266 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 GALR1P47211 349 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 FXYD7P58549 80 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 SPANXN5Q5MJ07 72 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 SPANXN2Q5MJ10 180 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 C1orf194Q5T5A4 169 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 GGNBP1Q5YKI7 109 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 ZNF767PQ75MW2 155 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 SOSTQ9BQB4 213 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 C7orf50Q9BRJ6 194 aaKnown RBP12.69□□□□□ -0.38
COL7A1-206ENST00000466591 SLC25A22Q9H936 323 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 HLA-DRB4X5D2U9 266 aa12.69□□□□□ -0.38
COL7A1-206ENST00000466591 IGHV4-4A0A075B6R2 117 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 ELOA3CA0A087WX78 387 aaPredicted RBP12.68□□□□□ -0.38
COL7A1-206ENST00000466591 DEFB131BA0A096LNP1 70 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 SMCO3A2RU48 225 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 SYNGR2O43760 224 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 TRIQKQ629K1 86 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 FOXI2Q6ZQN5 318 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 BPIFCQ8NFQ6 507 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 DEDD2Q8WXF8 326 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 TRIM63Q969Q1 353 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 C16orf92Q96LL3 132 aa12.68□□□□□ -0.38
COL7A1-206ENST00000466591 TRGV9Q99603 122 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms