RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 C2CD4CQ8TF44 421 aa16.55■□□□□ 0.24
PTPN4-207ENST00000460162 RBKSQ9H477 322 aa16.55■□□□□ 0.24
PTPN4-207ENST00000460162 FRAS1Q86XX4 4008 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 IGHV4-28A0A0C4DH34 117 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 DUXBA0A1W2PPF3 345 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 FAM90A26D6RGX4 464 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 PSG1P11464 419 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 SIGLEC15Q6ZMC9 328 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 RPP25LQ8N5L8 163 aaKnown RBP16.54■□□□□ 0.24
PTPN4-207ENST00000460162 OR51G1Q8NGK1 321 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 MCFD2Q8NI22 146 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 RNF125Q96EQ8 232 aa16.54■□□□□ 0.24
PTPN4-207ENST00000460162 C11orf94C9JXX5 98 aa16.53■□□□□ 0.24
PTPN4-207ENST00000460162 TRIM63Q969Q1 353 aa16.53■□□□□ 0.24
PTPN4-207ENST00000460162 RAB40CQ96S21 281 aa16.53■□□□□ 0.24
PTPN4-207ENST00000460162 X6R8D5 127 aa16.53■□□□□ 0.24
PTPN4-207ENST00000460162 RBMY1A1P0DJD3 496 aaKnown RBP16.52■□□□□ 0.24
PTPN4-207ENST00000460162 RBMY1CP0DJD4 496 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 AP3S2P59780 193 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 KLF9Q13886 244 aaPredicted RBP16.52■□□□□ 0.24
PTPN4-207ENST00000460162 RBMY1FQ15415 496 aaKnown RBP16.52■□□□□ 0.24
PTPN4-207ENST00000460162 OR8G2PQ6IF36 304 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 CSNK1G2-AS1Q8NCQ2 148 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 OR1S1Q8NH92 325 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 PFDN2Q9UHV9 154 aa16.52■□□□□ 0.24
PTPN4-207ENST00000460162 DEDDO75618 318 aa16.51■□□□□ 0.23
PTPN4-207ENST00000460162 GPX4P36969 197 aaPredicted RBP16.51■□□□□ 0.23
PTPN4-207ENST00000460162 SLC35E1Q96K37 410 aa16.51■□□□□ 0.23
PTPN4-207ENST00000460162 C1QTNF4Q9BXJ3 329 aa16.51■□□□□ 0.23
PTPN4-207ENST00000460162 TBC1D24Q9ULP9 559 aa16.51■□□□□ 0.23
PTPN4-207ENST00000460162 ZFP92A6NM28 416 aa16.5■□□□□ 0.23
PTPN4-207ENST00000460162 NUTF2P61970 127 aaKnown RBP16.5■□□□□ 0.23
PTPN4-207ENST00000460162 TMEM128Q5BJH2 165 aa16.5■□□□□ 0.23
PTPN4-207ENST00000460162 TMED4Q7Z7H5 227 aa16.5■□□□□ 0.23
PTPN4-207ENST00000460162 DEDD2Q8WXF8 326 aa16.5■□□□□ 0.23
PTPN4-207ENST00000460162 PITX3O75364 302 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 FABP1P07148 127 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 GAMTQ14353 236 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 TOMM5Q8N4H5 51 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 LRTM2Q8N967 370 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 PBDC1Q9BVG4 233 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 CLEC5AQ9NY25 188 aa16.49■□□□□ 0.23
PTPN4-207ENST00000460162 IGKV1D-37A0A075B6S9 117 aa16.48■□□□□ 0.23
PTPN4-207ENST00000460162 SLC25A6P12236 298 aa16.48■□□□□ 0.23
PTPN4-207ENST00000460162 V9GYH0 126 aa16.48■□□□□ 0.23
PTPN4-207ENST00000460162 H3BMM0 161 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 HLA-DRB4P13762 266 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 HLA-DMBP28068 263 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 NKX2-1P43699 371 aaPredicted RBP16.47■□□□□ 0.23
PTPN4-207ENST00000460162 PYDC2Q56P42 97 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 CENPSQ8N2Z9 138 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 SLC25A21Q9BQT8 299 aaPredicted RBP16.47■□□□□ 0.23
PTPN4-207ENST00000460162 HLA-DRB4X5D2U9 266 aa16.47■□□□□ 0.23
PTPN4-207ENST00000460162 ELOA3CA0A087WX78 387 aaPredicted RBP16.46■□□□□ 0.23
PTPN4-207ENST00000460162 TRAV10A0A0B4J240 114 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 IGLL5B9A064 214 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 VAMP1P23763 118 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 RAB11AP62491 216 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 ZNF90Q03938 601 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 Q6ZTC4 211 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 APLNQ9ULZ1 77 aa16.46■□□□□ 0.23
PTPN4-207ENST00000460162 LYZP61626 148 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 ZNF79Q15937 498 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 C1orf194Q5T5A4 169 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 TRGV9Q99603 122 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 TMED3Q9Y3Q3 217 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 VPS13DQ5THJ4 4388 aa16.45■□□□□ 0.22
PTPN4-207ENST00000460162 MED6O75586 246 aa16.44■□□□□ 0.22
PTPN4-207ENST00000460162 IAPPP10997 89 aa16.44■□□□□ 0.22
PTPN4-207ENST00000460162 PSMB3P49720 205 aa16.44■□□□□ 0.22
PTPN4-207ENST00000460162 CIB3Q96Q77 187 aaPredicted RBP16.44■□□□□ 0.22
PTPN4-207ENST00000460162 XCL2Q9UBD3 114 aa16.44■□□□□ 0.22
PTPN4-207ENST00000460162 DNAH6Q9C0G6 4158 aa16.44■□□□□ 0.22
PTPN4-207ENST00000460162 SNRPGP15A8MWD9 76 aa16.43■□□□□ 0.22
PTPN4-207ENST00000460162 S100A5P33763 92 aa16.43■□□□□ 0.22
PTPN4-207ENST00000460162 THAP8Q8NA92 274 aa16.43■□□□□ 0.22
PTPN4-207ENST00000460162 SOCS3O14543 225 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 SFT2D2O95562 160 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 ID1P41134 155 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 RPP30P78346 268 aaKnown RBP16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PRR20EP86478 221 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PRR20CP86479 221 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PRR20DP86480 221 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PRR20BP86481 221 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PRR20AP86496 221 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 PPP1R1AQ13522 171 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 FOXI2Q6ZQN5 318 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 WDR12Q9GZL7 423 aaKnown RBP16.42■□□□□ 0.22
PTPN4-207ENST00000460162 SAV1Q9H4B6 383 aaPredicted RBP16.42■□□□□ 0.22
PTPN4-207ENST00000460162 CELA1Q9UNI1 258 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 DNAH10Q8IVF4 4471 aa16.42■□□□□ 0.22
PTPN4-207ENST00000460162 CFDP00746 253 aaPredicted RBP16.41■□□□□ 0.22
PTPN4-207ENST00000460162 SAMD13Q5VXD3 122 aa16.41■□□□□ 0.22
PTPN4-207ENST00000460162 ZNF705AQ6ZN79 300 aaPredicted RBP16.41■□□□□ 0.22
PTPN4-207ENST00000460162 COQ8AQ8NI60 647 aa16.41■□□□□ 0.22
PTPN4-207ENST00000460162 PPP1R14BQ96C90 147 aa16.41■□□□□ 0.22
PTPN4-207ENST00000460162 CLUHP3Q96NS8 147 aa16.41■□□□□ 0.22
PTPN4-207ENST00000460162 PAIP2BQ9ULR5 123 aaKnown RBP16.41■□□□□ 0.22
PTPN4-207ENST00000460162 IGHV4-4A0A075B6R2 117 aa16.4■□□□□ 0.22
PTPN4-207ENST00000460162 IGKV1OR2-108A0A075B7D4 117 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms