RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SLC35E1Q96K37 410 aa8.82□□□□□ -1
USP40-210ENST00000454354 CIB3Q96Q77 187 aaPredicted RBP8.82□□□□□ -1
USP40-210ENST00000454354 SDHCQ99643 169 aaPredicted RBP8.82□□□□□ -1
USP40-210ENST00000454354 C11orf68Q9H3H3 251 aaKnown RBP8.82□□□□□ -1
USP40-210ENST00000454354 SEPSECSQ9HD40 501 aaKnown RBP8.82□□□□□ -1
USP40-210ENST00000454354 NUPR2A6NF83 97 aa8.81□□□□□ -1
USP40-210ENST00000454354 NDUFB6O95139 128 aa8.81□□□□□ -1
USP40-210ENST00000454354 CA1P00915 261 aaPredicted RBP8.81□□□□□ -1
USP40-210ENST00000454354 ZNF688P0C7X2 276 aa8.81□□□□□ -1
USP40-210ENST00000454354 GGNBP1Q5YKI7 109 aa8.81□□□□□ -1
USP40-210ENST00000454354 TRIQKQ629K1 86 aa8.81□□□□□ -1
USP40-210ENST00000454354 OR8G2PQ6IF36 304 aa8.81□□□□□ -1
USP40-210ENST00000454354 TRPT1Q86TN4 253 aaKnown RBP8.81□□□□□ -1
USP40-210ENST00000454354 STHQ8IWL8 128 aa8.81□□□□□ -1
USP40-210ENST00000454354 RNF125Q96EQ8 232 aa8.81□□□□□ -1
USP40-210ENST00000454354 RARRES2Q99969 163 aa8.81□□□□□ -1
USP40-210ENST00000454354 C9orf170A2RU37 121 aa8.8□□□□□ -1
USP40-210ENST00000454354 PRSS46E5RG02 174 aa8.8□□□□□ -1
USP40-210ENST00000454354 SYNGR2O43760 224 aa8.8□□□□□ -1
USP40-210ENST00000454354 HOXB5P09067 269 aa8.8□□□□□ -1
USP40-210ENST00000454354 GIG44P09565 113 aaPredicted RBP8.8□□□□□ -1
USP40-210ENST00000454354 SPP1P10451 314 aa8.8□□□□□ -1
USP40-210ENST00000454354 IAPPP10997 89 aa8.8□□□□□ -1
USP40-210ENST00000454354 BTCP35070 178 aa8.8□□□□□ -1
USP40-210ENST00000454354 INPP1P49441 399 aa8.8□□□□□ -1
USP40-210ENST00000454354 RAB11AP62491 216 aa8.8□□□□□ -1
USP40-210ENST00000454354 DHRS2Q13268 280 aa8.8□□□□□ -1
USP40-210ENST00000454354 PMS2P11Q13670 270 aa8.8□□□□□ -1
USP40-210ENST00000454354 TMEM41BQ5BJD5 291 aa8.8□□□□□ -1
USP40-210ENST00000454354 SIGLEC15Q6ZMC9 328 aa8.8□□□□□ -1
USP40-210ENST00000454354 C7orf50Q9BRJ6 194 aaKnown RBP8.8□□□□□ -1
USP40-210ENST00000454354 NRN1Q9NPD7 142 aa8.8□□□□□ -1
USP40-210ENST00000454354 IGKV1OR2-108A0A075B7D4 117 aa8.79□□□□□ -1
USP40-210ENST00000454354 CXorf65A6NEN9 183 aa8.79□□□□□ -1
USP40-210ENST00000454354 ZFP92A6NM28 416 aa8.79□□□□□ -1
USP40-210ENST00000454354 FABP1P07148 127 aa8.79□□□□□ -1
USP40-210ENST00000454354 RPP30P78346 268 aaKnown RBP8.79□□□□□ -1
USP40-210ENST00000454354 ZNF90Q03938 601 aa8.79□□□□□ -1
USP40-210ENST00000454354 MORN3Q6PF18 240 aaPredicted RBP8.79□□□□□ -1
USP40-210ENST00000454354 THAP8Q8NA92 274 aa8.79□□□□□ -1
USP40-210ENST00000454354 OR11H2Q8NH07 326 aa8.79□□□□□ -1
USP40-210ENST00000454354 TRGV9Q99603 122 aa8.79□□□□□ -1
USP40-210ENST00000454354 MAGT1Q9H0U3 335 aa8.79□□□□□ -1
USP40-210ENST00000454354 PFDN2Q9UHV9 154 aa8.79□□□□□ -1
USP40-210ENST00000454354 KMT2AQ03164 3969 aa8.78□□□□□ -1
USP40-210ENST00000454354 ADAP1O75689 374 aa8.78□□□□□ -1
USP40-210ENST00000454354 IL7P13232 177 aa8.78□□□□□ -1
USP40-210ENST00000454354 SNRPD3P62318 126 aaKnown RBP8.78□□□□□ -1
USP40-210ENST00000454354 PSMG4Q5JS54 123 aa8.78□□□□□ -1
USP40-210ENST00000454354 CEMP1Q6PRD7 247 aaPredicted RBP8.78□□□□□ -1
USP40-210ENST00000454354 NDUFA13Q9P0J0 144 aa8.78□□□□□ -1
USP40-210ENST00000454354 FLVCR2Q9UPI3 526 aa8.78□□□□□ -1
USP40-210ENST00000454354 KNCNA6PVL3 124 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 CENPXA8MT69 81 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 WRBO00258 174 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 CFDP00746 253 aaPredicted RBP8.77□□□□□ -1.01
USP40-210ENST00000454354 OR4E1P0C645 316 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 C4BPBP20851 252 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 ID3Q02535 119 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 CNPY1Q3B7I2 92 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 ACTL10Q5JWF8 245 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 C1orf194Q5T5A4 169 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 OR4D5Q8NGN0 318 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 COQ8AQ8NI60 647 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 LINC00476Q8WZB0 136 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 PBDC1Q9BVG4 233 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 FBXL17Q9UF56 701 aa8.77□□□□□ -1.01
USP40-210ENST00000454354 ZNF705EA8MWA4 302 aaPredicted RBP8.76□□□□□ -1.01
USP40-210ENST00000454354 SNRPGP15A8MWD9 76 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 LYZP61626 148 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 SPANXN5Q5MJ07 72 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 Q8NAQ8 132 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 RAB40CQ96S21 281 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 PAIP2BQ9ULR5 123 aaKnown RBP8.76□□□□□ -1.01
USP40-210ENST00000454354 SLC45A2Q9UMX9 530 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 KLK5Q9Y337 293 aaPredicted RBP8.76□□□□□ -1.01
USP40-210ENST00000454354 STRAPQ9Y3F4 350 aaKnown RBP8.76□□□□□ -1.01
USP40-210ENST00000454354 BIRC6Q9NR09 4857 aa8.76□□□□□ -1.01
USP40-210ENST00000454354 H3BP45 60 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 SOCS3O14543 225 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 IFNA21P01568 189 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 HLA-DRB4P13762 266 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 ANXA7P20073 488 aaKnown RBP8.75□□□□□ -1.01
USP40-210ENST00000454354 NKX2-1P43699 371 aaPredicted RBP8.75□□□□□ -1.01
USP40-210ENST00000454354 OR2F1Q13607 317 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 C4orf46Q504U0 113 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 ACOT7LQ6ZUV0 252 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 CSNK1G2-AS1Q8NCQ2 148 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 PHLDA1Q8WV24 401 aaPredicted RBP8.75□□□□□ -1.01
USP40-210ENST00000454354 MITD1Q8WV92 249 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 MFFQ9GZY8 342 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 HLA-DRB4X5D2U9 266 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 X6R8D5 127 aa8.75□□□□□ -1.01
USP40-210ENST00000454354 LINC00854A0A1B0GVQ3 168 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 H3BMM0 161 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 PLA2G10O15496 165 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 MIFP14174 115 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 PSMB3P49720 205 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 POLR2GP62487 172 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP40-210ENST00000454354 C11orf45Q8TAV5 145 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms