RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 A0A1W2PPI3 338 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 MRGPRG-AS1Q2M3A8 158 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 ASPHD1Q5U4P2 390 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 NUDT10Q8NFP7 164 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 C18orf32Q8TCD1 76 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 H1FXQ92522 213 aaKnown RBP13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 NUDT11Q96G61 164 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 TMEM68Q96MH6 324 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 SAP30LQ9HAJ7 183 aa13.17□□□□□ -0.3
CLCNKA-203ENST00000439316 FAM90A27PA6NNH2 459 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 NDUFB3O43676 98 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 IGHV3-48P01763 117 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 FOSL1P15407 271 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 G0S2P27469 103 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 DLX6P56179 175 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 VMA21Q3ZAQ7 101 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 GDF5OSQ5U4N7 250 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 PVRIGQ6DKI7 326 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 NUP35Q8NFH5 326 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 CHRDL1Q9BU40 450 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 TPSG1Q9NRR2 321 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 PKDREJQ9NTG1 2253 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 CRYGCP07315 174 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 C3orf79P0CE67 100 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 MFAP2P55001 183 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 ADORA2A-AS1P86434 159 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 LRRC10Q5BKY1 277 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 LYPD2Q6UXB3 125 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 C19orf35Q6ZS72 473 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 LINC00305Q7Z4B0 112 aa13.16□□□□□ -0.3
CLCNKA-203ENST00000439316 EPG5Q9HCE0 2579 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 NAV3Q8IVL0 2385 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 SLC25A17O43808 307 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 LOXP28300 417 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 PRRX1P54821 245 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 GNG5P63218 68 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 BSPH1Q075Z2 132 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 KLF5Q13887 457 aaPredicted RBP13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 ZNF841Q6ZN19 808 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 STXBP6Q8NFX7 210 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 PERPQ96FX8 193 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 CTSZQ9UBR2 303 aa13.15□□□□□ -0.3
CLCNKA-203ENST00000439316 C22orf46C9J442 243 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 OR2J3O76001 311 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 HIST1H1EP10412 219 aaKnown RBP13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 ZNF25P17030 456 aaPredicted RBP13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 SPATA45Q537H7 98 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 SMIM12Q96EX1 92 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 EPDR1Q9UM22 224 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 KLF12Q9Y4X4 402 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 IGLC7A0M8Q6 106 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 PLAUP00749 431 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 MC5RP33032 325 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 CDSNQ15517 529 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 TMEM155Q4W5P6 130 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 ETFRF1Q6IPR1 90 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 FAM19A2Q8N3H0 131 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 RITA1Q96K30 269 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 TRGV9Q99603 122 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 TNFRSF19Q9NS68 423 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 ABCA4P78363 2273 aa13.14□□□□□ -0.31
CLCNKA-203ENST00000439316 MOSP00540 346 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 LGALS7P47929 136 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 UBE2G1P62253 170 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 RUSC1-AS1Q66K80 236 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 PRR27Q6MZM9 219 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 SSX8Q7RTT4 187 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 ATP5L2Q7Z4Y8 100 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 CCL17Q92583 94 aa13.13□□□□□ -0.31
CLCNKA-203ENST00000439316 A0A1B0GXF2 115 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 A6NNC1 897 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 SLC25A5P05141 298 aaKnown RBP13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 GRNP28799 593 aaKnown RBP13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 TMEM208Q9BTX3 173 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 HIGD1CA8MV81 97 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 CORTO00230 105 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 FBXL19-AS1Q494R0 122 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 OR1B1Q8NGR6 318 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 RNASE6Q93091 150 aaKnown RBP13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 ALKBH7Q9BT30 221 aaPredicted RBP13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 LPAR2Q9HBW0 351 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 KAAG1Q9UBP8 84 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 UQCR10Q9UDW1 63 aa13.12□□□□□ -0.31
CLCNKA-203ENST00000439316 DLEU1O43261 78 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 IGLC2P0DOY2 106 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 IGLC3P0DOY3 106 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 IGHV1-8P0DP01 117 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 ORM2P19652 201 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 NTF3P20783 257 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 GAGE1Q13065 139 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 TEX45Q8NA69 505 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 BORCS7Q96B45 105 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 MLST8Q9BVC4 326 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 PGPA6NDG6 321 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 VWC2LB2RUY7 222 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 GP9P14770 177 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 PAX2Q02962 417 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 TNXAQ16473 311 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 HCP5Q6MZN7 132 aa13.11□□□□□ -0.31
CLCNKA-203ENST00000439316 TMEM116Q8NCL8 245 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms