RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 HLA-DMBP28068 263 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 PRR20EP86478 221 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 PRR20CP86479 221 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 PRR20DP86480 221 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 PRR20BP86481 221 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 PRR20AP86496 221 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 OR1S1Q8NH92 325 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 RNF125Q96EQ8 232 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 BCL7BQ9BQE9 202 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 SLIRPQ9GZT3 109 aaKnown RBP12.37□□□□□ -0.43
TRIM39-209ENST00000428728 HRH4Q9H3N8 390 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 NRN1Q9NPD7 142 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 U3KQ87 197 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 FRAS1Q86XX4 4008 aa12.37□□□□□ -0.43
TRIM39-209ENST00000428728 ELOA3CA0A087WX78 387 aaPredicted RBP12.36□□□□□ -0.43
TRIM39-209ENST00000428728 C11orf94C9JXX5 98 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 H3BMQ9 156 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 BUB3O43684 328 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 ANXA3P12429 323 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 TNFSF8P32971 234 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 Q6ZTC4 211 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 CSNK1G2-AS1Q8NCQ2 148 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 XCL2Q9UBD3 114 aa12.36□□□□□ -0.43
TRIM39-209ENST00000428728 FABP12A6NFH5 140 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 ZFP92A6NM28 416 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 TCTAP57738 103 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 SRPXP78539 464 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 KLF9Q13886 244 aaPredicted RBP12.35□□□□□ -0.43
TRIM39-209ENST00000428728 TMED4Q7Z7H5 227 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 CENPSQ8N2Z9 138 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 MCFD2Q8NI22 146 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 SLC35E1Q96K37 410 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 CELA1Q9UNI1 258 aa12.35□□□□□ -0.43
TRIM39-209ENST00000428728 IAPPP10997 89 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 FAUP35544 74 aaKnown RBP12.34□□□□□ -0.43
TRIM39-209ENST00000428728 LYZP61626 148 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 NUTF2P61970 127 aaKnown RBP12.34□□□□□ -0.43
TRIM39-209ENST00000428728 ZNF90Q03938 601 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 ZNF767PQ75MW2 155 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 SOSTQ9BQB4 213 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 PAIP2BQ9ULR5 123 aaKnown RBP12.34□□□□□ -0.43
TRIM39-209ENST00000428728 APLNQ9ULZ1 77 aa12.34□□□□□ -0.43
TRIM39-209ENST00000428728 TRAV10A0A0B4J240 114 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 H3BMM0 161 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 IGKV3-20P01619 116 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 NUP62P37198 522 aaPredicted RBP12.33□□□□□ -0.44
TRIM39-209ENST00000428728 DEFB1P60022 68 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 GAMTQ14353 236 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 TRIM63Q969Q1 353 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 C1QTNF4Q9BXJ3 329 aa12.33□□□□□ -0.44
TRIM39-209ENST00000428728 IGHV4-4A0A075B6R2 117 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 IGKV1D-37A0A075B6S9 117 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 HLA-DRB4P13762 266 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 VAMP1P23763 118 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 FXYD7P58549 80 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 OR2F1Q13607 317 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 PYDC2Q56P42 97 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 GDF5OSQ5U4N7 250 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 OR8G2PQ6IF36 304 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 GSG1LQ6UXU4 331 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 WDR12Q9GZL7 423 aaKnown RBP12.32□□□□□ -0.44
TRIM39-209ENST00000428728 SEPSECSQ9HD40 501 aaKnown RBP12.32□□□□□ -0.44
TRIM39-209ENST00000428728 HLA-DRB4X5D2U9 266 aa12.32□□□□□ -0.44
TRIM39-209ENST00000428728 GPX4P36969 197 aaPredicted RBP12.31□□□□□ -0.44
TRIM39-209ENST00000428728 NKX2-1P43699 371 aaPredicted RBP12.31□□□□□ -0.44
TRIM39-209ENST00000428728 PPP1R14BQ96C90 147 aa12.31□□□□□ -0.44
TRIM39-209ENST00000428728 LINC00052Q96N35 136 aa12.31□□□□□ -0.44
TRIM39-209ENST00000428728 PFDN2Q9UHV9 154 aa12.31□□□□□ -0.44
TRIM39-209ENST00000428728 DUXBA0A1W2PPF3 345 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 FABP1P07148 127 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 AP3S2P59780 193 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 RAB11AP62491 216 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 TMEM128Q5BJH2 165 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 TOMM5Q8N4H5 51 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 COQ8AQ8NI60 647 aa12.3□□□□□ -0.44
TRIM39-209ENST00000428728 IGHV3OR16-12A0A075B7B8 117 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 PIGBOS1A0A0B4J2F0 54 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 PITX3O75364 302 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 ATP5IP56385 69 aaPredicted RBP12.29□□□□□ -0.44
TRIM39-209ENST00000428728 C12orf74Q32Q52 190 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 MAGT1Q9H0U3 335 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 V9GYH0 126 aa12.29□□□□□ -0.44
TRIM39-209ENST00000428728 DEFB131BA0A096LNP1 70 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 ID1P41134 155 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 PSMB3P49720 205 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 ZNF79Q15937 498 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 OR4B1Q8NGF8 309 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 TRGV9Q99603 122 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 RNF126Q9BV68 326 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 SCRT1Q9BWW7 348 aa12.28□□□□□ -0.44
TRIM39-209ENST00000428728 SAV1Q9H4B6 383 aaPredicted RBP12.28□□□□□ -0.44
TRIM39-209ENST00000428728 IGKV1OR2-108A0A075B7D4 117 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 CCDC160A6NGH7 325 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 SNRPGP15A8MWD9 76 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 SOCS3O14543 225 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 MED6O75586 246 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 AMBPP02760 352 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 EMP1P54849 157 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 PPP1R1AQ13522 171 aa12.27□□□□□ -0.45
TRIM39-209ENST00000428728 FOXI2Q6ZQN5 318 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms