RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TICRRQ7Z2Z1 1910 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 MDFIC2A0A1B0GVS7 189 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 GPR31O00270 319 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 UBFD1O14562 309 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 NDUFC2O95298 119 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 ZNF682O95780 498 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 FOXA1P55317 472 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 FXYD7P58549 80 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 AP1S1P61966 158 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 FKBP1AP62942 108 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 SARNPP82979 210 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 ZNF141Q15928 474 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 TAF9Q16594 264 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 LGALS9BQ3B8N2 356 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 KRTAP25-1Q3LHN0 102 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 IBA57Q5T440 356 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 AADACL3Q5VUY0 350 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 LGALS9CQ6DKI2 356 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 ZNF439Q8NDP4 499 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 OR10K1Q8NGX5 313 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 DYDC1Q8WWB3 177 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 DNAJC9Q8WXX5 260 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 GPR146Q96CH1 333 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 OR8B2Q96RD0 313 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 UPK3BQ9BT76 320 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 BOLA2Q9H3K6 86 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 SMDT1Q9H4I9 107 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 IL36BQ9NZH7 164 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 PZPP20742 1482 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 CLTCQ00610 1675 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 ITSN2Q9NZM3 1697 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 NAV1Q8NEY1 1877 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 YLPM1P49750 1951 aaKnown RBP1.98□□□□□ -2.09
USP40-204ENST00000427947 NID2Q14112 1375 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 TMEM2Q9UHN6 1383 aa1.98□□□□□ -2.09
USP40-204ENST00000427947 CCDC18Q5T9S5 1454 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 FYCO1Q9BQS8 1478 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 A0A1B0GW54 56 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 C17orf51A8MQB3 221 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 TSTD3H0UI37 97 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 H7C1C5 153 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 LEPROTO15243 131 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 SYNGR2O43760 224 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 MFSD11O43934 449 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 CST8O60676 142 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 CDS2O95674 445 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 PRM2P04554 102 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 SMIM10L2AP0DMW4 78 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 SMIM10L2BP0DMW5 78 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 IFI30P13284 250 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 ZNF22P17026 224 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BOP23527 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 S100GP29377 79 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 BLVRBP30043 206 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BBP33778 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BDP58876 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 ARPC4P59998 168 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 LCN6P62502 163 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BCP62807 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 MEF2BQ02080 365 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 ZNF117Q03924 483 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST2H2BEQ16778 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 PYDC2Q56P42 97 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 C9orf64Q5T6V5 341 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 ZNF705AQ6ZN79 300 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 C2orf91Q6ZV80 131 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 GRINAQ7Z429 371 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 LYPD6Q86Y78 171 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 FAM24BQ8N5W8 94 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 OR10P1Q8NGE3 313 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 OR5C1Q8NGR4 320 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BHQ93079 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 TOMM6Q96B49 74 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 TVP23CQ96ET8 276 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 CAPZA3Q96KX2 299 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 IGF2BP2-AS1Q96M15 143 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BNQ99877 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 HIST1H2BMQ99879 126 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 C19orf12Q9NSK7 152 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 LYRM2Q9NU23 88 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 PRNDQ9UKY0 176 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 SLC35A3Q9Y2D2 325 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 MYO3AQ8NEV4 1616 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 ABCC5O15440 1437 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 CEP162Q5TB80 1403 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 C10orf71Q711Q0 1435 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 VPS8Q8N3P4 1428 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 TIAM1Q13009 1591 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 UGGT1Q9NYU2 1555 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 INO80Q9ULG1 1556 aaPredicted RBP1.97□□□□□ -2.09
USP40-204ENST00000427947 MYO16Q9Y6X6 1858 aa1.97□□□□□ -2.09
USP40-204ENST00000427947 ABCC3O15438 1527 aa1.96□□□□□ -2.09
USP40-204ENST00000427947 ERVK-7P63135 1459 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 CAMSAP2Q08AD1 1489 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 NLRP1Q9C000 1473 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 A0A1W2PNN7 141 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 C1orf196B1AJZ1 125 aa1.96□□□□□ -2.1
USP40-204ENST00000427947 PFDN1O60925 122 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms