RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 IRGMA1A4Y4 181 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 INS-IGF2F8WCM5 200 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 H0YIV9 168 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 MED6O75586 246 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 PPBPP02775 128 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 FRKP42685 505 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 DEFA3P59666 94 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 MXD1Q05195 221 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 MEP1BQ16820 701 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CMC1Q7Z7K0 106 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 OR11H4Q8NGC9 324 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 OR52N1Q8NH53 320 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CIRBP-AS1Q8TBR5 109 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 SPSB1Q96BD6 273 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 WDR34Q96EX3 536 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 SDR39U1Q9NRG7 319 aaPredicted RBP2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 KCNIP2Q9NS61 270 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 SCOCQ9UIL1 159 aa2.02□□□□□ -2.09
CCDC88A-205ENST00000426576 CCDC160A6NGH7 325 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 MARCH11A6NNE9 402 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 RNASE4P34096 147 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 TAS2R43P59537 309 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 DEFB114Q30KQ6 69 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC35D3Q5M8T2 416 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 OR8G2PQ6IF36 304 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 FAAP20Q6NZ36 180 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM156AQ8NDB6 213 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 OR4P4Q8NGL7 312 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PP6455Q8WZ26 134 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 FGF23Q9GZV9 251 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 GTSF1LQ9H1H1 148 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 POPDC3Q9HBV1 291 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 LRP4O75096 1905 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PTPRFP10586 1907 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PNMA8CA0A1B0GUJ8 204 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 ETDCA0A1B0GVM5 59 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 TNFRSF11BO00300 401 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PFDN1O60925 122 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV1-51P01701 117 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 CD55P08174 381 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 FCGR1AP12314 374 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 VBP1P61758 197 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 AMTNQ6UX39 209 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 OR8A1Q8NGG7 326 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 STOML3Q8TAV4 291 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 RITA1Q96K30 269 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PDFQ9HBH1 243 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 TXNL4BQ9NX01 149 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 CTSZQ9UBR2 303 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 KLHDC2Q9Y2U9 406 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 MYH13Q9UKX3 1938 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 TRBV25-1A0A075B6N4 114 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 DENRO43583 198 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 IGHG4P01861 327 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 NQO2P16083 231 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 GLIPR1P48060 266 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 RBM3P98179 157 aaKnown RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 COTL1Q14019 142 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 CD300LDQ6UXZ3 194 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 CACNG8Q8WXS5 425 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF486Q96H40 463 aaPredicted RBP2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 RHOVQ96L33 236 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 JPT2Q9H910 190 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV10-54A0A075B6I4 117 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 KRTAP9-6A0A140TA67 174 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 A6NIN4 97 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 ATP5HO75947 161 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 BCL3P20749 454 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 CDKN2CP42773 168 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 LPAR6P43657 344 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 NDUFA6P56556 154 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 FXYD6P3P58550 94 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 DNAJB13P59910 316 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 TAL2Q16559 108 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 C22orf42Q6IC83 251 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 SPINK6Q6UWN8 80 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF562Q6V9R5 426 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PRSS3P2Q8NHM4 247 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 GNPDA2Q8TDQ7 276 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 MZB1Q8WU39 189 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 PFDN5Q99471 154 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 RNF5Q99942 180 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 SLCO1B3Q9NPD5 702 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 IL20Q9NYY1 176 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 IL36BQ9NZH7 164 aa2.01□□□□□ -2.09
CCDC88A-205ENST00000426576 OBSL1O75147 1896 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LOC100509620A0A075B734 347 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 TGIF2-C20orf24A0A0A6YYL0 155 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A0J9YXV3 536 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 LINC00854A0A1B0GVQ3 168 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 I3L521 148 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC25A20O43772 301 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 OR7C2O60412 319 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 OR2H2O95918 312 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 CGAP01215 116 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1-39P01597 117 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 IGKV1D-39P04432 117 aa2□□□□□ -2.09
CCDC88A-205ENST00000426576 MRPL28Q13084 256 aaKnown RBP2□□□□□ -2.09
CCDC88A-205ENST00000426576 GNMTQ14749 295 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms