RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 GATD1Q8NB37 220 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 DEFB108BQ8NET1 73 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 OR4F17Q8NGA8 305 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 RND1Q92730 232 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 LINC00479Q96M42 142 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 SRSF8Q9BRL6 282 aaKnown RBP8.87□□□□□ -0.99
LIMS1-207ENST00000422797 MAP1LC3CQ9BXW4 147 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 ZDBF2Q9HCK1 2354 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 TANC2Q9HCD6 1990 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 CACNA1DQ01668 2161 aa8.87□□□□□ -0.99
LIMS1-207ENST00000422797 TRAV34A0A0B4J273 112 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 NKX2-8O15522 239 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 NDUFB3O43676 98 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 IGLV2-23P01705 113 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 TCRAP04437 139 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 GP9P14770 177 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 CD40P25942 277 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 FOXA3P55318 350 aaPredicted RBP8.86□□□□□ -0.99
LIMS1-207ENST00000422797 MLANAQ16655 118 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 FAM201AQ5SY85 155 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 LCN12Q6JVE5 192 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 DUX4L9Q6RFH8 374 aaPredicted RBP8.86□□□□□ -0.99
LIMS1-207ENST00000422797 IGFL3Q6UXB1 125 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 TMEM108Q6UXF1 575 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 C8orf46Q8TAG6 207 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 ST6GALNAC6Q969X2 333 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 MED13Q9UHV7 2174 aa8.86□□□□□ -0.99
LIMS1-207ENST00000422797 LOC102724200A0A096LPH7 203 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 CGB1A6NKQ9 187 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 K7EQM0 130 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 TOX4O94842 621 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 MOSP00540 346 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 RPL27AP46776 148 aaKnown RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 RIGQ13278 110 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 FBLN7Q53RD9 439 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 FAM120AOSQ5T036 256 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 C16orf54Q6UWD8 224 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 Q86TA4 180 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 LYPD1Q8N2G4 141 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 OR1B1Q8NGR6 318 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 DPF1Q92782 380 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 GSX1Q9H4S2 264 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 HIGD1AQ9Y241 93 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 DSCAML1Q8TD84 2053 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 AHCTF1Q8WYP5 2266 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 PPIAL4EA0A075B759 164 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 IGHV1-24A0A0C4DH33 117 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 A0A1W2PPI3 338 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 C17orf100A8MU93 164 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 PPIAL4DF5H284 164 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 CCL25O15444 150 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 PPIAL4FP0DN26 164 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 ORM2P19652 201 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 CEACAM8P31997 349 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 GNG5P63218 68 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 RHOGP84095 191 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 TMEM200BQ69YZ2 307 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 SPATA12Q7Z6I5 190 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 ATOH7Q8N100 152 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 OR4C5Q8NGB2 326 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 SSBP4Q9BWG4 385 aaPredicted RBP8.85□□□□□ -0.99
LIMS1-207ENST00000422797 Q9H3A6 140 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 KAAG1Q9UBP8 84 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 PPIAL4AQ9Y536 164 aa8.85□□□□□ -0.99
LIMS1-207ENST00000422797 HOXB4P17483 251 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-207ENST00000422797 COL8A1P27658 744 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 GPR6P46095 362 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-207ENST00000422797 CDKN1BP46527 198 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 SSBP2P81877 361 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-207ENST00000422797 HIST1H1AQ02539 215 aaPredicted RBP8.84□□□□□ -0.99
LIMS1-207ENST00000422797 PSMG4Q5JS54 123 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 SAPCD1Q5SSQ6 148 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 ZNF841Q6ZN19 808 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 TCF24Q7RTU0 167 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 BLNKQ8WV28 456 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 URB1-AS1Q96HZ7 61 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 RNF5Q99942 180 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 FAM215AQ9Y5M1 114 aa8.84□□□□□ -0.99
LIMS1-207ENST00000422797 TRIOO75962 3097 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 A0A1B0GUT8 65 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 SERTM2A0A1B0GWG4 89 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 TMEM178BH3BS89 294 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 SLC25A17O43808 307 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 CSN1S1P47710 185 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 PCP4P48539 62 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 UNQ5815/PRO19632Q6UWF5 114 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 PIP4P1Q86T03 277 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 TMEM75Q8N9X5 138 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 H1FXQ92522 213 aaKnown RBP8.83□□□□□ -1
LIMS1-207ENST00000422797 PGLYRP4Q96LB8 373 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 F11RQ9Y624 299 aaKnown RBP8.83□□□□□ -1
LIMS1-207ENST00000422797 WDR87Q6ZQQ6 2873 aa8.83□□□□□ -1
LIMS1-207ENST00000422797 WDFY4Q6ZS81 3184 aa8.82□□□□□ -1
LIMS1-207ENST00000422797 FBLL1A6NHQ2 334 aaKnown RBP8.82□□□□□ -1
LIMS1-207ENST00000422797 HTR1DP28221 377 aa8.82□□□□□ -1
LIMS1-207ENST00000422797 RBPJQ06330 500 aa8.82□□□□□ -1
LIMS1-207ENST00000422797 TMEM155Q4W5P6 130 aa8.82□□□□□ -1
LIMS1-207ENST00000422797 LINC01545Q5VT33 79 aa8.82□□□□□ -1
LIMS1-207ENST00000422797 ALKBH2Q6NS38 261 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms