RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 RBMY1CP0DJD4 496 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 AKR1C4P17516 323 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 FAUP35544 74 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 NUTF2P61970 127 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 SUPT4H1P63272 117 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 RBMY1FQ15415 496 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 OR8G2PQ6IF36 304 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 SIGLEC15Q6ZMC9 328 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 OR51G1Q8NGK1 321 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 RNF125Q96EQ8 232 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 RAB40CQ96S21 281 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 C1QTNF4Q9BXJ3 329 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR13Q9NZ81 148 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 X6R8D5 127 aa8.38□□□□□ -1.07
SQSTM1-203ENST00000422245 DUXBA0A1W2PPF3 345 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 FABP1P07148 127 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 PSG1P11464 419 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 HLA-DMBP28068 263 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 AP3S2P59780 193 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 KLF9Q13886 244 aaPredicted RBP8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 LYZL2Q7Z4W2 148 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 CSNK1G2-AS1Q8NCQ2 148 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 OR1S1Q8NH92 325 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 SLC35E1Q96K37 410 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 SLIRPQ9GZT3 109 aaKnown RBP8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 RBKSQ9H477 322 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 CLEC5AQ9NY25 188 aa8.37□□□□□ -1.07
SQSTM1-203ENST00000422245 TRAV10A0A0B4J240 114 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 FABP12A6NFH5 140 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 ZFP92A6NM28 416 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 IGLL5B9A064 214 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 H3BMQ9 156 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 HLA-DRB4P13762 266 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 GPX4P36969 197 aaPredicted RBP8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 NKX2-1P43699 371 aaPredicted RBP8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 Q6ZTC4 211 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 MCFD2Q8NI22 146 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 SOSTQ9BQB4 213 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 PBDC1Q9BVG4 233 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 HLA-DRB4X5D2U9 266 aa8.36□□□□□ -1.07
SQSTM1-203ENST00000422245 FRAS1Q86XX4 4008 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 ELOA3CA0A087WX78 387 aaPredicted RBP8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 H3BMM0 161 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 TNFSF8P32971 234 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 C1orf194Q5T5A4 169 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 TRIM63Q969Q1 353 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 APLNQ9ULZ1 77 aa8.35□□□□□ -1.07
SQSTM1-203ENST00000422245 PITX3O75364 302 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 AMBPP02760 352 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 SLC25A6P12236 298 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 ID1P41134 155 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PSMB3P49720 205 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 LYZP61626 148 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 RAB11AP62491 216 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR20EP86478 221 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR20CP86479 221 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR20DP86480 221 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR20BP86481 221 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 PRR20AP86496 221 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 GAMTQ14353 236 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 TMEM128Q5BJH2 165 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 SAMD13Q5VXD3 122 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 TMED4Q7Z7H5 227 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 TOMM5Q8N4H5 51 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 LRTM2Q8N967 370 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 DEDD2Q8WXF8 326 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 CIB3Q96Q77 187 aaPredicted RBP8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 RNF126Q9BV68 326 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 XCL2Q9UBD3 114 aa8.34□□□□□ -1.07
SQSTM1-203ENST00000422245 IGHV4-4A0A075B6R2 117 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 IGKV1D-37A0A075B6S9 117 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 MED6O75586 246 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 VAMP1P23763 118 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 ZNF90Q03938 601 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 FOXI2Q6ZQN5 318 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 COQ8AQ8NI60 647 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 NEU1Q99519 415 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 TRGV9Q99603 122 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 SLC25A21Q9BQT8 299 aaPredicted RBP8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 CELA1Q9UNI1 258 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 DNAH10Q8IVF4 4471 aa8.33□□□□□ -1.08
SQSTM1-203ENST00000422245 TMEM189A5PLL7 270 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 SNRPGP15A8MWD9 76 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 SOCS3O14543 225 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 CFDP00746 253 aaPredicted RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 IAPPP10997 89 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 RPP30P78346 268 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 PYDC2Q56P42 97 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 SPATA31B1PQ5VZV4 182 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 ZNF705AQ6ZN79 300 aaPredicted RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 PPP1R14BQ96C90 147 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 CLUHP3Q96NS8 147 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 WDR12Q9GZL7 423 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 SAV1Q9H4B6 383 aaPredicted RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 PAIP2BQ9ULR5 123 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 TMED3Q9Y3Q3 217 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 V9GYH0 126 aa8.32□□□□□ -1.08
SQSTM1-203ENST00000422245 VPS13DQ5THJ4 4388 aa8.31□□□□□ -1.08
SQSTM1-203ENST00000422245 DEFB131BA0A096LNP1 70 aa8.31□□□□□ -1.08
SQSTM1-203ENST00000422245 TEX48A0A1B0GUV7 120 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms