RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RNASE10Q5GAN6 216 aaKnown RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 SIGLEC15Q6ZMC9 328 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 ZNF705AQ6ZN79 300 aaPredicted RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 UBE2DNLQ8IWF7 75 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 SELENOHQ8IZQ5 122 aaKnown RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 OR51G1Q8NGK1 321 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 OR1S2Q8NGQ3 325 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 RNASE11Q8TAA1 199 aaKnown RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 RRNAD1Q96FB5 475 aaKnown RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 ACY3Q96HD9 319 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 LINC00052Q96N35 136 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 SLC35B3Q9H1N7 401 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 NRN1Q9NPD7 142 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 HEYLQ9NQ87 328 aaPredicted RBP5.76□□□□□ -1.49
VIM-202ENST00000421459 COPZ2Q9P299 210 aa5.76□□□□□ -1.49
VIM-202ENST00000421459 TRAV30A0A087WSZ9 112 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 CEBPZOSA8MTT3 80 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 IFNA21P01568 189 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 CD74P04233 296 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 SPART-AS1P0CW21 52 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 RD3LP0DJH9 198 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 PSG1P11464 419 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 HLA-DRB4P13762 266 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 HTR2BP41595 481 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 EIF2B2P49770 351 aaKnown RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 AP2S1P53680 142 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 SPCS3P61009 180 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 YPEL3P61236 119 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 SNRPD3P62318 126 aaKnown RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 ZNF79Q15937 498 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 C2orf83Q53S99 150 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 SPANXN2Q5MJ10 180 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 FAM222AQ5U5X8 452 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 C1orf158Q8N1D5 194 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 ZNF709Q8N972 641 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 OR4B1Q8NGF8 309 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 TERB2Q8NHR7 220 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 GLYATL2Q8WU03 294 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 ZNF486Q96H40 463 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 DIRAS2Q96HU8 199 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 ABHD1Q96SE0 405 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 SDHCQ99643 169 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 RTBDNQ9BSG5 229 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 PBDC1Q9BVG4 233 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 C1QTNF4Q9BXJ3 329 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 RABL2AQ9UBK7 228 aaPredicted RBP5.75□□□□□ -1.49
VIM-202ENST00000421459 DKK2Q9UBU2 259 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 CACNG5Q9UF02 275 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 RABL2BQ9UNT1 228 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 HLA-DRB4X5D2U9 266 aa5.75□□□□□ -1.49
VIM-202ENST00000421459 TEX13DA0A0J9YY54 714 aaPredicted RBP5.74□□□□□ -1.49
VIM-202ENST00000421459 RPS10-NUDT3A0A1W2PQS6 291 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 FABP12A6NFH5 140 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 CDS2O95674 445 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 TOMM40O96008 361 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 NKX2-1P43699 371 aaPredicted RBP5.74□□□□□ -1.49
VIM-202ENST00000421459 NUTF2P61970 127 aaKnown RBP5.74□□□□□ -1.49
VIM-202ENST00000421459 ZNF90Q03938 601 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 TNP2Q05952 138 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 AARDQ4LEZ3 155 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 TMEM88Q6PEY1 159 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 SLC24A4Q8NFF2 622 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 ZFAND1Q8TCF1 268 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 NEU1Q99519 415 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 NIPSNAP3BQ9BS92 247 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 CCDC32Q9BV29 185 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 SRRQ9GZT4 340 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 TMEM222Q9H0R3 208 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 EXTL2Q9UBQ6 330 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 MTFP1Q9UDX5 166 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 RFNGQ9Y644 331 aa5.74□□□□□ -1.49
VIM-202ENST00000421459 IGKV1D-37A0A075B6S9 117 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 CTDSPLO15194 276 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 SCGB2A1O75556 95 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 ATG12O94817 140 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 RAB3DO95716 219 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 PRB4P10163 310 aaPredicted RBP5.73□□□□□ -1.49
VIM-202ENST00000421459 SLC25A4P12235 298 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 OR2F1Q13607 317 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 C1orf134Q5TEV5 83 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 FAM78BQ5VT40 261 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 TMEM268Q5VZI3 342 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 ARRDC1Q8N5I2 433 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 CCDC71LQ8N9Z2 235 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 OR52E5Q8NH55 327 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 RNASEH2CQ8TDP1 164 aaKnown RBP5.73□□□□□ -1.49
VIM-202ENST00000421459 RNF125Q96EQ8 232 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 C20orf173Q96LM9 149 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 C17orf77Q96MU5 243 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 SAV1Q9H4B6 383 aaPredicted RBP5.73□□□□□ -1.49
VIM-202ENST00000421459 NAA60Q9H7X0 242 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 YTHDF2Q9Y5A9 579 aaKnown RBP5.73□□□□□ -1.49
VIM-202ENST00000421459 FAT1Q14517 4588 aa5.73□□□□□ -1.49
VIM-202ENST00000421459 LOC102723971A0A1B0GUV8 181 aa5.72□□□□□ -1.49
VIM-202ENST00000421459 SOCS3O14543 225 aa5.72□□□□□ -1.49
VIM-202ENST00000421459 GSTZ1O43708 216 aaPredicted RBP5.72□□□□□ -1.49
VIM-202ENST00000421459 UPK1BO75841 260 aa5.72□□□□□ -1.49
VIM-202ENST00000421459 IFITM3Q01628 133 aa5.72□□□□□ -1.49
VIM-202ENST00000421459 FCN2Q15485 313 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms