RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 RPS4Y2Q8TD47 263 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 DDIT4LQ96D03 193 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 VSIG2Q96IQ7 327 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 RTBDNQ9BSG5 229 aaPredicted RBP3.84□□□□□ -1.8
VPS13A-207ENST00000419472 LINC00470Q9BZP3 86 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 FAM60AQ9NP50 221 aa3.84□□□□□ -1.8
VPS13A-207ENST00000419472 ADAMTS9Q9P2N4 1935 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 SPTY2D1-AS1A0A0U1RR47 76 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 H0YGG7 62 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 HMGN4O00479 90 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 DUSP14O95147 198 aaKnown RBP3.83□□□□□ -1.8
VPS13A-207ENST00000419472 CDS2O95674 445 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 TNFP01375 233 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 OR5AL1P0C617 328 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF708P17019 499 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 SSTR5P35346 364 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 MYCNOSP40205 109 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 THBS3P49746 956 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF83P51522 516 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 DLX1P56177 255 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 PPP1CBP62140 327 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 FUT5Q11128 374 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 NNATQ16517 81 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 POU2AF1Q16633 256 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 LTC4SQ16873 150 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 GAPTQ8N292 157 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF433Q8N7K0 673 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-207ENST00000419472 DEFB124Q8NES8 71 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 LMX1AQ8TE12 382 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 PSMF1Q92530 271 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 STARD4Q96DR4 205 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 FAM19A4Q96LR4 140 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 HSPB9Q9BQS6 159 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 PSMG3Q9BT73 122 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-207ENST00000419472 FBN2P35556 2912 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 MED12Q93074 2177 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 A0A087WUU8 490 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 IGHV3-35A0A0C4DH35 117 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 SPAARA0A1B0GVQ0 90 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 IGSF23A1L1A6 192 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF736B4DX44 427 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-207ENST00000419472 NPIPB7O75200 414 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 DEDDO75618 318 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 KBTBD11O94819 623 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 CGAP01215 116 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 IGKV1D-16P01601 117 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 IGHV3-48P01763 117 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 SERPINA7P05543 415 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 TAS2R41P59536 307 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 HSD52Q0P140 79 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 OR10X1Q8NGY0 326 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 CLDND2Q8NHS1 167 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 FAM213BQ8TBF2 198 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 OR2A5Q96R48 311 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 LITAFQ99732 161 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 LRRC61Q9BV99 259 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 LPAR5Q9H1C0 372 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 EDA2RQ9HAV5 297 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 MANBALQ9NQG1 85 aa3.83□□□□□ -1.8
VPS13A-207ENST00000419472 SDK2Q58EX2 2172 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 TMEM189A5PLL7 270 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 CD5LO43866 347 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 SFT2D2O95562 160 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 CYB5AP00167 134 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 HRASP01112 189 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 SRP14P37108 136 aaKnown RBP3.82□□□□□ -1.8
VPS13A-207ENST00000419472 OR3A4PP47883 348 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 GFERP55789 205 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 PIGPP57054 158 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 YPEL3P61236 119 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-207ENST00000419472 RUNX1Q01196 453 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 EGFEM1PQ0D2K5 195 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 C11orf72Q8NBR9 251 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 RERGQ96A58 199 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-207ENST00000419472 RBMXL1Q96E39 390 aaKnown RBP3.82□□□□□ -1.8
VPS13A-207ENST00000419472 NEURL3Q96EH8 262 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 DERL1Q9BUN8 251 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 NPVFQ9HCQ7 196 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 PXMP4Q9Y6I8 212 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 ZNF780BQ9Y6R6 833 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 TENM4Q6N022 2769 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 RP1L1Q8IWN7 2480 aaPredicted RBP3.82□□□□□ -1.8
VPS13A-207ENST00000419472 TRAV8-6A0A0B4J262 113 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 A0A0G2JMM0 328 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 A0A1W2PPB8 328 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 KIR3DP1A8MWS1 328 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 CNIH1O95406 144 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 PLCXD2Q0VAA5 305 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 CEACAM21Q3KPI0 293 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 TMEM128Q5BJH2 165 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 SPIN3Q5JUX0 258 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 SLC48A1Q6P1K1 146 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 NKAPP1Q8N9T2 125 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 PTH2Q96A98 100 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 C18orf12Q96KH6 178 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 SH3BGRL3Q9H299 93 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 CCL28Q9NRJ3 127 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 TP53TG3Q9ULZ0 132 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 HEBP2Q9Y5Z4 205 aa3.82□□□□□ -1.8
VPS13A-207ENST00000419472 RELNP78509 3460 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms