RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PPDPFLQ8WWR9 84 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 NABP1Q96AH0 204 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 SIGLEC12Q96PQ1 595 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 NEUROG3Q9Y4Z2 214 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 TDRD15B5MCY1 1934 aaKnown RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 ETV2O00321 342 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 RFPL3SP0C7P2 107 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 TDGF1P3P51864 188 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 SS18Q15532 418 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 SHANK2-AS3Q9BTD1 123 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 METRNQ9UJH8 293 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 ANKRD36A6QL64 1941 aa5.02□□□□□ -1.61
SCN1A-203ENST00000409050 PRRC2BQ5JSZ5 2229 aaKnown RBP5.02□□□□□ -1.61
SCN1A-203ENST00000409050 KIAA1217Q5T5P2 1943 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 PDE4DIPQ5VU43 2346 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV2-26A0A0B4J1V2 119 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 C1QCP02747 245 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 ACYP1P07311 99 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 C5orf64Q2M2E5 130 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 LGALS9BQ3B8N2 356 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 LGALS9CQ6DKI2 356 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV1-18A0A0C4DH31 117 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 H3BTX0 84 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 SOCS3O14543 225 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV1-46P01743 117 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 LINC00158P58513 81 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 FOXF2Q12947 444 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 ERCC8Q13216 396 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 LINC00311Q8N616 119 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 C9orf106Q8NAJ2 232 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 RCHY1Q96PM5 261 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 SPAG8Q99932 426 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV4-39P01824 125 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 QRFPP83859 136 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 Q8N8P6 123 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 ST6GALNAC3Q8NDV1 305 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 Q8TCH9 128 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 CST9LQ9H4G1 147 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 COX11Q9Y6N1 276 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 ARID1BQ8NFD5 2236 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM8BA6NDV4 472 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 C3orf79P0CE67 100 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IL15RAQ13261 267 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 TIMM21Q9BVV7 248 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHV1-3A0A0C4DH29 117 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 MBD3L4A6NDZ8 208 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 MBD3L3A6NE82 208 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 MBD3L5A6NJ08 208 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 SHISA9B4DS77 424 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 B4DSR2 109 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 H0YJW9 148 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 H3BUA1 57 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 IGHG3P01860 377 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 RPL32P62910 135 aaKnown RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 Q86TA4 180 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 RPP25LQ8N5L8 163 aaKnown RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 NUP35Q8NFH5 326 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 MBD3L2Q8NHZ7 208 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 MRPL53Q96EL3 112 aaKnown RBP5.01□□□□□ -1.61
SCN1A-203ENST00000409050 PYGO2Q9BRQ0 406 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 CHCHD5Q9BSY4 110 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 LENEPQ9Y5L5 61 aa5.01□□□□□ -1.61
SCN1A-203ENST00000409050 COL11A1P12107 1806 aaPredicted RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 A0A087WX48 190 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 A0A0A6YYD4 124 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 D6R8Y8 96 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 TMEM178BH3BS89 294 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 TGFBR3LH3BV60 316 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 TIMM23O14925 209 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 TNFRSF6BO95407 300 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 LMO1P25800 156 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 FAM27E3Q08E93 113 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 GUSBP1Q15486 140 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 Q5PR19 223 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 ZCCHC24Q8N2G6 241 aaKnown RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 C8orf31Q8N9H6 132 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 GFI1Q99684 422 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 AKIRIN1Q9H9L7 192 aaPredicted RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 TNS1Q9HBL0 1735 aaKnown RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 PSG1P11464 419 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 GNG5P63218 68 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 LYZL1Q6UWQ5 148 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 RMI2Q96E14 147 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 TRAV5A0A0B4J249 113 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 SH2D1AO60880 128 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 PYYP10082 97 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 GATA4P43694 442 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 C10orf91Q5T1B1 145 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 FAM110DQ8TAY7 271 aaPredicted RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 IGKV3OR2-268A0A0C4DH90 116 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 CXCL1P09341 107 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 SLAQ13239 276 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 KIR3DS1Q14943 382 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 RBMY1FQ15415 496 aaKnown RBP5□□□□□ -1.61
SCN1A-203ENST00000409050 PYY3Q5JQD4 70 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 C20orf78Q9BR46 151 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 RNF114Q9Y508 228 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 PARP14Q460N5 1801 aa5□□□□□ -1.61
SCN1A-203ENST00000409050 HAX1O00165 279 aa4.99□□□□□ -1.61
SCN1A-203ENST00000409050 C11orf52Q96A22 123 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms