RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RBPMS2Q6ZRY4 209 aaKnown RBP15.05■□□□□ -0
USP48-204ENST00000400301 A0A1W2PPI3 338 aa15.05■□□□□ -0
USP48-204ENST00000400301 PSG1P11464 419 aa15.05■□□□□ -0
USP48-204ENST00000400301 BTF3P20290 206 aaKnown RBP15.05■□□□□ -0
USP48-204ENST00000400301 ARPC1AQ92747 370 aa15.05■□□□□ -0
USP48-204ENST00000400301 A0A1B0GUT8 65 aa15.04■□□□□ -0
USP48-204ENST00000400301 IFITM10A6NMD0 228 aa15.04■□□□□ -0
USP48-204ENST00000400301 PSG9Q00887 426 aa15.04■□□□□ -0
USP48-204ENST00000400301 NEU4Q8WWR8 484 aaPredicted RBP15.04■□□□□ -0
USP48-204ENST00000400301 SCRT1Q9BWW7 348 aa15.04■□□□□ -0
USP48-204ENST00000400301 NDUFA4L2Q9NRX3 87 aa15.04■□□□□ -0
USP48-204ENST00000400301 K7EM74 188 aa15.04■□□□□ -0
USP48-204ENST00000400301 IGHV2-70P01814 119 aa15.04■□□□□ -0
USP48-204ENST00000400301 CX3CL1P78423 397 aa15.04■□□□□ -0
USP48-204ENST00000400301 ZNF664Q8N3J9 261 aa15.04■□□□□ -0
USP48-204ENST00000400301 C8orf46Q8TAG6 207 aa15.04■□□□□ -0
USP48-204ENST00000400301 TYMSP04818 313 aa15.04■□□□□ -0
USP48-204ENST00000400301 TCTAP57738 103 aa15.04■□□□□ -0
USP48-204ENST00000400301 TSKUQ8WUA8 353 aa15.04■□□□□ -0
USP48-204ENST00000400301 RNF125Q96EQ8 232 aa15.04■□□□□ -0
USP48-204ENST00000400301 C14orf144Q96I85 54 aa15.04■□□□□ -0
USP48-204ENST00000400301 PMS2P5A8MQ11 134 aa15.03■□□□□ -0
USP48-204ENST00000400301 KHDC1LQ5JSQ8 128 aa15.03■□□□□ -0
USP48-204ENST00000400301 PRR31Q5SQ13 230 aa15.03■□□□□ -0
USP48-204ENST00000400301 ZNF600Q6ZNG1 722 aa15.03■□□□□ -0
USP48-204ENST00000400301 ZNF295-AS1Q8N0V1 137 aa15.03■□□□□ -0
USP48-204ENST00000400301 OR5AN1Q8NGI8 311 aa15.03■□□□□ -0
USP48-204ENST00000400301 TMEM70Q9BUB7 260 aa15.03■□□□□ -0
USP48-204ENST00000400301 SIGLEC9Q9Y336 463 aa15.03■□□□□ -0
USP48-204ENST00000400301 FOSL1P15407 271 aa15.03■□□□□ -0
USP48-204ENST00000400301 DLX1P56177 255 aa15.03■□□□□ -0
USP48-204ENST00000400301 ST6GALNAC3Q8NDV1 305 aa15.03■□□□□ -0
USP48-204ENST00000400301 FBXL7Q9UJT9 491 aa15.03■□□□□ -0
USP48-204ENST00000400301 KIR3DL3Q8N743 410 aa15.03■□□□□ -0
USP48-204ENST00000400301 LY6HO94772 140 aa15.03■□□□□ -0
USP48-204ENST00000400301 CDKN1AP38936 164 aa15.03■□□□□ -0
USP48-204ENST00000400301 TMEM78Q5T7P6 136 aa15.03■□□□□ -0
USP48-204ENST00000400301 TEX36Q5VZQ5 186 aa15.03■□□□□ -0
USP48-204ENST00000400301 ZNF833PQ6ZTB9 187 aa15.03■□□□□ -0
USP48-204ENST00000400301 AP5S1Q9NUS5 200 aa15.03■□□□□ -0
USP48-204ENST00000400301 SPG11Q96JI7 2443 aa15.03■□□□□ -0
USP48-204ENST00000400301 MUC21A0A0G2JKD1 596 aa15.02■□□□□ -0
USP48-204ENST00000400301 MUC21A0A140T8X8 626 aa15.02■□□□□ -0
USP48-204ENST00000400301 SMIM17P0DL12 118 aa15.02■□□□□ -0
USP48-204ENST00000400301 MSMPQ1L6U9 139 aa15.02■□□□□ -0
USP48-204ENST00000400301 MUC21Q5SSG8 566 aa15.02■□□□□ -0
USP48-204ENST00000400301 TRGV9Q99603 122 aa15.02■□□□□ -0
USP48-204ENST00000400301 RAXQ9Y2V3 346 aa15.02■□□□□ -0
USP48-204ENST00000400301 CBY3A6NI87 242 aa15.02□□□□□ -0.01
USP48-204ENST00000400301 COL8A2P25067 703 aa15.02□□□□□ -0.01
USP48-204ENST00000400301 MIEN1Q9BRT3 115 aa15.02□□□□□ -0.01
USP48-204ENST00000400301 GOLT1BQ9Y3E0 138 aa15.02□□□□□ -0.01
USP48-204ENST00000400301 SOX21Q9Y651 276 aaPredicted RBP15.02□□□□□ -0.01
USP48-204ENST00000400301 POU2AF1Q16633 256 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 TMEM155Q4W5P6 130 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 OR10J3Q5JRS4 329 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 SEM1Q6ZVN7 128 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 METTL26Q96S19 204 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 IGHV3-49A0A0A0MS15 119 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 GGTLC3B5MD39 225 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 PLA2G5P39877 138 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 DIAPH2-AS1Q14236 149 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 IGHV3OR16-10A0A075B7F0 116 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 WT1-ASQ06250 92 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 DAZAP2Q15038 168 aaPredicted RBP15.01□□□□□ -0.01
USP48-204ENST00000400301 KLF17Q5JT82 389 aaPredicted RBP15.01□□□□□ -0.01
USP48-204ENST00000400301 EXOC3-AS1Q8N2X6 119 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 BUB1B-PAK6H3BSN5 160 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 LHBP01229 141 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 SAPCD1Q5SSQ6 148 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 SPANXN1Q5VSR9 72 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 PVRIGQ6DKI7 326 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 TMEM136Q6ZRR5 245 aa15.01□□□□□ -0.01
USP48-204ENST00000400301 F11RQ9Y624 299 aaKnown RBP15.01□□□□□ -0.01
USP48-204ENST00000400301 CPAMD8Q8IZJ3 1885 aa15□□□□□ -0.01
USP48-204ENST00000400301 NPPCP23582 126 aa15□□□□□ -0.01
USP48-204ENST00000400301 LOXP28300 417 aaPredicted RBP15□□□□□ -0.01
USP48-204ENST00000400301 GPR183P32249 361 aa15□□□□□ -0.01
USP48-204ENST00000400301 PRR20EP86478 221 aa15□□□□□ -0.01
USP48-204ENST00000400301 PRR20CP86479 221 aa15□□□□□ -0.01
USP48-204ENST00000400301 PRR20DP86480 221 aa15□□□□□ -0.01
USP48-204ENST00000400301 PRR20BP86481 221 aa15□□□□□ -0.01
USP48-204ENST00000400301 PRR20AP86496 221 aa15□□□□□ -0.01
USP48-204ENST00000400301 FAM71F2Q6NXP2 309 aa15□□□□□ -0.01
USP48-204ENST00000400301 OR10AG1Q8NH19 301 aa15□□□□□ -0.01
USP48-204ENST00000400301 CDPF1Q6NVV7 123 aa15□□□□□ -0.01
USP48-204ENST00000400301 OR2T8A6NH00 312 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 SFTPCP11686 197 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 C16orf92Q96LL3 132 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 PRDM13Q9H4Q3 707 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 LSM4Q9Y4Z0 139 aaKnown RBP14.99□□□□□ -0.01
USP48-204ENST00000400301 KLRD1Q13241 179 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 SLC25A39Q9BZJ4 359 aaPredicted RBP14.99□□□□□ -0.01
USP48-204ENST00000400301 IGHV3-66A0A0C4DH42 116 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 TCF21O43680 179 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 NDUFS6O75380 124 aaKnown RBP14.99□□□□□ -0.01
USP48-204ENST00000400301 TCRAP04437 139 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 DNLZQ5SXM8 178 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 TMEM116Q8NCL8 245 aa14.99□□□□□ -0.01
USP48-204ENST00000400301 TRAV8-1A0A0A6YYK1 113 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms