RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ZFAND3Q9H8U3 227 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 SMPXQ9UHP9 88 aa21.1■□□□□ 0.97
HMGB1-205ENST00000399494 IGHV3-49A0A0A0MS15 119 aa21.09■□□□□ 0.97
HMGB1-205ENST00000399494 IGKV1-17P01599 117 aa21.09■□□□□ 0.97
HMGB1-205ENST00000399494 APOC4P55056 127 aa21.09■□□□□ 0.97
HMGB1-205ENST00000399494 PSENENQ9NZ42 101 aa21.09■□□□□ 0.97
HMGB1-205ENST00000399494 UBQLN2Q9UHD9 624 aa21.09■□□□□ 0.97
HMGB1-205ENST00000399494 UBE2CO00762 179 aa21.08■□□□□ 0.97
HMGB1-205ENST00000399494 TSPAN4O14817 238 aa21.08■□□□□ 0.97
HMGB1-205ENST00000399494 Q8WTZ3 238 aa21.08■□□□□ 0.97
HMGB1-205ENST00000399494 RHPN1-AS1Q9BWJ2 59 aa21.08■□□□□ 0.97
HMGB1-205ENST00000399494 INMT-MINDY4F8WBC2 141 aa21.07■□□□□ 0.96
HMGB1-205ENST00000399494 DEFB135Q30KP9 77 aa21.07■□□□□ 0.96
HMGB1-205ENST00000399494 FRAS1Q86XX4 4008 aa21.07■□□□□ 0.96
HMGB1-205ENST00000399494 IGHV3OR16-13A0A075B7E8 117 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 IGHV3-74A0A0B4J1X5 117 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 CHEK1O14757 476 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 PRAF2O60831 178 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 YPEL3P61236 119 aaPredicted RBP21.06■□□□□ 0.96
HMGB1-205ENST00000399494 GAMTQ14353 236 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 RNF183Q96D59 192 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 METTL26Q96S19 204 aa21.06■□□□□ 0.96
HMGB1-205ENST00000399494 ZFP92A6NM28 416 aa21.05■□□□□ 0.96
HMGB1-205ENST00000399494 ATF4P18848 351 aaPredicted RBP21.05■□□□□ 0.96
HMGB1-205ENST00000399494 NPPCP23582 126 aa21.05■□□□□ 0.96
HMGB1-205ENST00000399494 GSG1LQ6UXU4 331 aa21.05■□□□□ 0.96
HMGB1-205ENST00000399494 SMIM8Q96KF7 97 aa21.05■□□□□ 0.96
HMGB1-205ENST00000399494 RAB40CQ96S21 281 aa21.05■□□□□ 0.96
HMGB1-205ENST00000399494 KIR2DL5BA0A0G2JN68 375 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 KIR2DL5BA0A0G2JPC4 375 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 ODF3L2Q3SX64 289 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 KIR2DL5AQ8N109 375 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 KIR2DL5BQ8NHK3 375 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 NARS2Q96I59 477 aaKnown RBP21.04■□□□□ 0.96
HMGB1-205ENST00000399494 C2orf50Q96LR7 162 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 RNF2Q99496 336 aa21.04■□□□□ 0.96
HMGB1-205ENST00000399494 KMT2AQ03164 3969 aa21.03■□□□□ 0.96
HMGB1-205ENST00000399494 MBPP02686 304 aaPredicted RBP21.03■□□□□ 0.96
HMGB1-205ENST00000399494 STPG3Q8N7X2 389 aa21.03■□□□□ 0.96
HMGB1-205ENST00000399494 MARVELD1Q9BSK0 173 aa21.03■□□□□ 0.96
HMGB1-205ENST00000399494 TMEM231Q9H6L2 316 aa21.03■□□□□ 0.96
HMGB1-205ENST00000399494 RCL1Q9Y2P8 373 aaKnown RBP21.03■□□□□ 0.96
HMGB1-205ENST00000399494 LSM5Q9Y4Y9 91 aaKnown RBP21.03■□□□□ 0.96
HMGB1-205ENST00000399494 L7N2F9 121 aa21.02■□□□□ 0.96
HMGB1-205ENST00000399494 TOMM40O96008 361 aa21.02■□□□□ 0.96
HMGB1-205ENST00000399494 RD3LP0DJH9 198 aa21.02■□□□□ 0.96
HMGB1-205ENST00000399494 VAMP2P63027 116 aa21.02■□□□□ 0.96
HMGB1-205ENST00000399494 ST8SIA2Q92186 375 aa21.02■□□□□ 0.96
HMGB1-205ENST00000399494 KLK5Q9Y337 293 aaPredicted RBP21.02■□□□□ 0.96
HMGB1-205ENST00000399494 IGHV3-66A0A0C4DH42 116 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 A0A1W2PS18 150 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 SNRPGP15A8MWD9 76 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 APOHP02749 345 aaPredicted RBP21.01■□□□□ 0.95
HMGB1-205ENST00000399494 IL4P05112 153 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 FABP1P07148 127 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 TAS2R30P59541 319 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 OR8G2PQ6IF36 304 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 KRTAP17-1Q9BYP8 105 aa21.01■□□□□ 0.95
HMGB1-205ENST00000399494 PRSS46E5RG02 174 aa21■□□□□ 0.95
HMGB1-205ENST00000399494 PAX9P55771 341 aa21■□□□□ 0.95
HMGB1-205ENST00000399494 AKR1C1Q04828 323 aa21■□□□□ 0.95
HMGB1-205ENST00000399494 VSIRQ9H7M9 311 aa21■□□□□ 0.95
HMGB1-205ENST00000399494 MAP6D1Q9H9H5 199 aa21■□□□□ 0.95
HMGB1-205ENST00000399494 IGKV3-7A0A075B6H7 116 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 OR4C46A6NHA9 309 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 TSC22D2O75157 780 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 CD5P06127 495 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 PSG1P11464 419 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 RPL35AP18077 110 aaKnown RBP20.99■□□□□ 0.95
HMGB1-205ENST00000399494 TCF24Q7RTU0 167 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 OR51G1Q8NGK1 321 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 GRAMD2BQ96HH9 432 aa20.99■□□□□ 0.95
HMGB1-205ENST00000399494 SMCO3A2RU48 225 aa20.98■□□□□ 0.95
HMGB1-205ENST00000399494 METTL15P1P0C7V9 234 aa20.98■□□□□ 0.95
HMGB1-205ENST00000399494 CRYBB3P26998 211 aa20.98■□□□□ 0.95
HMGB1-205ENST00000399494 S100A10P60903 97 aa20.98■□□□□ 0.95
HMGB1-205ENST00000399494 RPL11P62913 178 aaKnown RBP20.98■□□□□ 0.95
HMGB1-205ENST00000399494 ACOT7LQ6ZUV0 252 aa20.98■□□□□ 0.95
HMGB1-205ENST00000399494 RPP25LQ8N5L8 163 aaKnown RBP20.98■□□□□ 0.95
HMGB1-205ENST00000399494 C7orf66A4D0T2 115 aa20.97■□□□□ 0.95
HMGB1-205ENST00000399494 K7EPK0 472 aa20.97■□□□□ 0.95
HMGB1-205ENST00000399494 GOSR2O14653 212 aa20.97■□□□□ 0.95
HMGB1-205ENST00000399494 HNRNPCP07910 306 aaKnown RBP eCLIP20.97■□□□□ 0.954e-6■□□□□ 10.4
HMGB1-205ENST00000399494 PVALBP20472 110 aaPredicted RBP20.97■□□□□ 0.95
HMGB1-205ENST00000399494 ZNF90Q03938 601 aa20.97■□□□□ 0.95
HMGB1-205ENST00000399494 IGKV1D-37A0A075B6S9 117 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 TFPI2P48307 235 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 BCAP31P51572 246 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 PAFAH1B2P68402 229 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 USF2Q15853 346 aaPredicted RBP20.96■□□□□ 0.95
HMGB1-205ENST00000399494 TMEM14EPQ6UXP3 125 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 TMEM217Q8N7C4 229 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 OR10P1Q8NGE3 313 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 TRGV9Q99603 122 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 PBDC1Q9BVG4 233 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 RABAC1Q9UI14 185 aa20.96■□□□□ 0.95
HMGB1-205ENST00000399494 DFFBO76075 338 aa20.95■□□□□ 0.94
HMGB1-205ENST00000399494 GBGT1Q8N5D6 347 aa20.95■□□□□ 0.94
HMGB1-205ENST00000399494 THAP8Q8NA92 274 aa20.95■□□□□ 0.94
HMGB1-205ENST00000399494 PHLDA1Q8WV24 401 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms