RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FAM231AP0DMU4 169 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 FAM231CP0DMU5 169 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 SMIM10L2AP0DMW4 78 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 SMIM10L2BP0DMW5 78 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF823P16415 610 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 FKBP2P26885 142 aaKnown RBP2.83□□□□□ -1.96
HMGB1-204ENST00000399489 CMC4P56277 68 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-204ENST00000399489 TPPP2P59282 170 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 MEIG1Q5JSS6 88 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 CLLU1Q5K131 121 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 GTSCR1Q86UQ5 136 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 LHFPL1Q86WI0 220 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 SLC22A24Q8N4F4 322 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 RNF175Q8N4F7 328 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 PACRGLQ8N7B6 248 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 POM121L12Q8N7R1 296 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 FER1L6-AS1Q8NA97 138 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 C5orf17Q8NAS9 161 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 OR4S1Q8NGB4 309 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 LMX1AQ8TE12 382 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 OR2A5Q96R48 311 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 TMEM133Q9H2Q1 129 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 TCEAL2Q9H3H9 227 aaPredicted RBP2.83□□□□□ -1.96
HMGB1-204ENST00000399489 RNF122Q9H9V4 155 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF286AQ9HBT8 521 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 MRPS16Q9Y3D3 137 aaKnown RBP2.83□□□□□ -1.96
HMGB1-204ENST00000399489 C5P01031 1676 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 C4BP0C0L5 1744 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 RGPD5Q99666 1765 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 PKD1L3Q7Z443 1732 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 DOT1LQ8TEK3 1739 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGLV11-55A0A075B6I3 123 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGKV1-12A0A0C4DH73 117 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 A0A0G2JMM0 328 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 A0A1W2PPB8 328 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 KIR3DP1A8MWS1 328 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 CDC42EP2O14613 210 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGKV1D-12P01611 117 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 INAFM2P0DMQ5 153 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OPRK1P41145 380 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 RPS11P62280 158 aaKnown RBP eCLIP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TMEM14EPQ6UXP3 125 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 Q6ZS49 121 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 WDR86Q86TI4 376 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 PRR15Q8IV56 129 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 Q8N7P7 452 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF709Q8N972 641 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OR8A1Q8NGG7 326 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OR5D14Q8NGL3 314 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OR10D4PQ8NGN7 298 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OR4A5Q8NH83 315 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 C2orf15Q8WU43 125 aaKnown RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TMEM158Q8WZ71 300 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 MAL2Q969L2 176 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 C16orf74Q96GX8 76 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 GPX7Q96SL4 187 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 NAA38Q9BRA0 125 aaKnown RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 HDHD3Q9BSH5 251 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 SPANXDQ9BXN6 97 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 AICDAQ9GZX7 198 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TMEM191AQ9H0A3 160 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 C11orf68Q9H3H3 251 aaKnown RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TAS2R8Q9NYW2 309 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 CENPFP49454 3210 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 UBR3Q6ZT12 1888 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 FAM208AQ9UK61 1670 aaKnown RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TRBV20OR9-2A0A075B6H5 130 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV3-49A0A0A0MS15 119 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 KLF18A0A0U1RQI7 1052 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 NDUFAF8A1L188 74 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 C7orf71A4D174 169 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 H7C423 109 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 BPY2O14599 106 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 PGLYRP1O75594 196 aaPredicted RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGLV3-25P01717 112 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 APCSP02743 223 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV4-34P06331 123 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 CD2P06729 351 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 OPRM1P35372 400 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 HOXC5Q00444 222 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF141Q15928 474 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 FAM78AQ5JUQ0 283 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 LCE3AQ5TA76 89 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 TMEM256Q8N2U0 113 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 C15orf56Q8N910 161 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 RAB2BQ8WUD1 216 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 MAGOHBQ96A72 148 aaKnown RBP2.82□□□□□ -1.96
HMGB1-204ENST00000399489 CCDC167Q9P0B6 97 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 COMMD3Q9UBI1 195 aa2.82□□□□□ -1.96
HMGB1-204ENST00000399489 HTTP42858 3142 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 CD163L1Q9NR16 1453 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 MAP2P11137 1827 aaKnown RBP2.81□□□□□ -1.96
HMGB1-204ENST00000399489 TRAV9-1A0A075B6T8 112 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 IZUMO1RA6ND01 250 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 FNDC10F2Z333 226 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 LY6LH3BQJ8 138 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 TRGC2P03986 189 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 CD14P08571 375 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF19P17023 458 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 ETV6P41212 452 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms