RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FOXA2Q9Y261 457 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 OR2T8A6NH00 312 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 FCN1O00602 326 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 PFN1P07737 140 aaKnown RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 MGST1P10620 155 aaKnown RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 RHOBP62745 196 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 TEX36Q5VZQ5 186 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 C8orf46Q8TAG6 207 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 NAGKQ9UJ70 344 aa8.33□□□□□ -1.08
COL6A3-205ENST00000392004 UTP20O75691 2785 aaKnown RBP8.33□□□□□ -1.08
COL6A3-205ENST00000392004 IGHV3OR16-12A0A075B7B8 117 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 TCRBV4S1A1TA0A5B7 111 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 NMSQ5H8A3 153 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 PRR27Q6MZM9 219 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 STXBP6Q8NFX7 210 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 IL22RA2Q969J5 263 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OR4C12Q96R67 309 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 VSIRQ9H7M9 311 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 TRAPPC1Q9Y5R8 145 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OR9G9P0C7N8 305 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 BLCAPP62952 87 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 RNF151Q2KHN1 245 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 TMEM208Q9BTX3 173 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 IFI27L2Q9H2X8 130 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 TPSG1Q9NRR2 321 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 TANC2Q9HCD6 1990 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OR10J4P0C629 311 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 RPL23P62829 140 aaKnown RBP8.32□□□□□ -1.08
COL6A3-205ENST00000392004 COA6Q5JTJ3 125 aaKnown RBP8.32□□□□□ -1.08
COL6A3-205ENST00000392004 PDPNQ86YL7 162 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OR51G1Q8NGK1 321 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OR4A5Q8NH83 315 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 OSR1Q8TAX0 266 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-205ENST00000392004 NACAE9PAV3 2078 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 PAX1P15863 534 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 UBE2E1P51965 193 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 LMO4P61968 165 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 RHOGP84095 191 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 ATP5G2Q06055 141 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 SGK494Q96LW2 274 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 NABP2Q9BQ15 211 aa8.32□□□□□ -1.08
COL6A3-205ENST00000392004 M0R1W7 72 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 LHBP01229 141 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 FCGR2BP31994 310 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-205ENST00000392004 MLANAQ16655 118 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 TOMM20LQ6UXN7 152 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 SLC25A48Q6ZT89 311 aaKnown RBP8.31□□□□□ -1.08
COL6A3-205ENST00000392004 FAM110DQ8TAY7 271 aaPredicted RBP8.31□□□□□ -1.08
COL6A3-205ENST00000392004 TBX15Q96SF7 602 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 CENPVL3A0A0U1RRI6 287 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 TMEM250H0YL14 139 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 RRHO14718 337 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 ASCL4Q6XD76 172 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 ELOVL1Q9BW60 279 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 PARLQ9H300 379 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 PAX9P55771 341 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 C1orf194Q5T5A4 169 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 LSM10Q969L4 123 aaKnown RBP8.31□□□□□ -1.08
COL6A3-205ENST00000392004 JMJD8Q96S16 334 aa8.31□□□□□ -1.08
COL6A3-205ENST00000392004 AREGP15514 252 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 MIC13Q5XKP0 118 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 PYGO2Q9BRQ0 406 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 AGMATQ9BSE5 352 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 TIMM9Q9Y5J7 89 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 TEX38Q6PEX7 206 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 MANBALQ9NQG1 85 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 CDC42EP3Q9UKI2 254 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 LRBAP50851 2863 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 H0YJW9 148 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 VENTXO95231 258 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 IL4P05112 153 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 RANP62826 216 aaKnown RBP8.3□□□□□ -1.08
COL6A3-205ENST00000392004 PSG5Q15238 335 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 RBPMS2Q6ZRY4 209 aaKnown RBP8.3□□□□□ -1.08
COL6A3-205ENST00000392004 OR4P4Q8NGL7 312 aa8.3□□□□□ -1.08
COL6A3-205ENST00000392004 CTXND1A0A1B0GTU2 59 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 PSMB11A5LHX3 300 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 DLEU1O43261 78 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 LINC00869P0C866 280 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 ZNF726P1Q15940 193 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 ACTL10Q5JWF8 245 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 PSMG3-AS1Q96PY0 264 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 WDR61Q9GZS3 305 aaKnown RBP8.29□□□□□ -1.08
COL6A3-205ENST00000392004 MBNL3Q9NUK0 354 aaKnown RBP8.29□□□□□ -1.08
COL6A3-205ENST00000392004 MOB4Q9Y3A3 225 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 KRTAP27-1Q3LI81 207 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 SSX7Q7RTT5 188 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 OR4B1Q8NGF8 309 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 OR10G9Q8NGN4 311 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 OR10G7Q8NGN6 311 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 NBEAL1Q6ZS30 2694 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 CBY3A6NI87 242 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 CD1BP29016 333 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 C5orf64Q2M2E5 130 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 LEMD1Q68G75 181 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 Q6ZSR3 168 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 S100A7AQ86SG5 101 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 ODF3L1Q8IXM7 274 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 CORO2AQ92828 525 aa8.29□□□□□ -1.08
COL6A3-205ENST00000392004 PAGE4O60829 102 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms