RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 SRD5A1P18405 259 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 GATA2P23769 480 aaPredicted RBP8.88□□□□□ -0.99
RTN3-206ENST00000377819 NBL1P41271 181 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 C4orf48Q5BLP8 95 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 CDCP2Q5VXM1 449 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 LINC00518Q8N0U6 118 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 WFDC6Q9BQY6 131 aa8.88□□□□□ -0.99
RTN3-206ENST00000377819 MRPS18AQ9NVS2 196 aaKnown RBP8.88□□□□□ -0.99
RTN3-206ENST00000377819 LSM4Q9Y4Z0 139 aaKnown RBP8.88□□□□□ -0.99
RTN3-206ENST00000377819 SIGLEC5O15389 551 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 CECR9P0C854 216 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 DAD1P61803 113 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 FAM166AQ6J272 317 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 THAP8Q8NA92 274 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 AQP3Q92482 292 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 NPDC1Q9NQX5 325 aaPredicted RBP8.87□□□□□ -0.99
RTN3-206ENST00000377819 TRAV40A0A0B4J280 105 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 ATP5G3P48201 142 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 BSPH1Q075Z2 132 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 C8orf82Q6P1X6 216 aaPredicted RBP8.87□□□□□ -0.99
RTN3-206ENST00000377819 WFDC12Q8WWY7 111 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 UBE2E2Q96LR5 201 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 IGHV3-73A0A0B4J1V6 119 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 TRBV5-5A0A0J9YX44 114 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 C9JAW5 83 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 CELA2AP08217 269 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 KLF17Q5JT82 389 aaPredicted RBP8.87□□□□□ -0.99
RTN3-206ENST00000377819 SLC25A48Q6ZT89 311 aaKnown RBP8.87□□□□□ -0.99
RTN3-206ENST00000377819 C9orf139Q6ZV77 190 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 C1QL2Q7Z5L3 287 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 TMEM158Q8WZ71 300 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 C5orf66Q9H5L9 145 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 PPP1R3EQ9H7J1 279 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 OTOGLQ3ZCN5 2332 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 SPSB3Q6PJ21 355 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 CFHR5Q9BXR6 569 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 TMEM133Q9H2Q1 129 aa8.87□□□□□ -0.99
RTN3-206ENST00000377819 PPP1R32Q7Z5V6 425 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 R3HDMLQ9H3Y0 253 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 CRLF1O75462 422 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 ITGBL1O95965 494 aaPredicted RBP8.86□□□□□ -0.99
RTN3-206ENST00000377819 SPINK8P0C7L1 97 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 ADMP35318 185 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 SCN3AQ9NY46 2000 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 C17orf98A8MV24 154 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 RHODO00212 210 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 C8orf31Q8N9H6 132 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 LHFPL6Q9Y693 200 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 ZNF708P17019 499 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 RPL23P62829 140 aaKnown RBP8.86□□□□□ -0.99
RTN3-206ENST00000377819 ACTL10Q5JWF8 245 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 PLPPR1Q8TBJ4 325 aa8.86□□□□□ -0.99
RTN3-206ENST00000377819 SP7Q8TDD2 431 aaPredicted RBP8.85□□□□□ -0.99
RTN3-206ENST00000377819 LINC00477Q96M19 166 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 RNASE7Q9H1E1 156 aaKnown RBP8.85□□□□□ -0.99
RTN3-206ENST00000377819 CTSBP07858 339 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 LIME1Q9H400 295 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 PILRAQ9UKJ1 303 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 RFNGQ9Y644 331 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 KIAA2026Q5HYC2 2103 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 B4DSR2 109 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 ZNF138P52744 262 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 UTF1Q5T230 341 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 SPXQ9BT56 116 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 IGLV1-36A0A0B4J1U3 117 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 FAM201AQ5SY85 155 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 PIP4P2Q8N4L2 257 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 GTSF1LQ9H1H1 148 aa8.85□□□□□ -0.99
RTN3-206ENST00000377819 DOCK5Q9H7D0 1870 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 PQLC2LA1A4F0 135 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 F8VVB4 439 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 F8VWA3 439 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 SRP19P09132 144 aaKnown RBP8.84□□□□□ -0.99
RTN3-206ENST00000377819 TSKUQ8WUA8 353 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 SCRT2Q9NQ03 307 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 DTX4Q9Y2E6 619 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 SPG11Q96JI7 2443 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 ATG2BQ96BY7 2078 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 THBDP07204 575 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 CCL3L1P16619 93 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 PFN2P35080 140 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 GNG5P63218 68 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 LINC00527Q9UJ94 153 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 K7ERS5 55 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 AMBPP02760 352 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 TFF3Q07654 80 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 A0A087WWC5 75 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 LCNL1Q6ZST4 164 aa8.84□□□□□ -0.99
RTN3-206ENST00000377819 MLNRO43193 412 aa8.83□□□□□ -1
RTN3-206ENST00000377819 TRACP01848 142 aa8.83□□□□□ -1
RTN3-206ENST00000377819 CEACAM1P13688 526 aa8.83□□□□□ -1
RTN3-206ENST00000377819 ZNF474Q6S9Z5 364 aaPredicted RBP8.83□□□□□ -1
RTN3-206ENST00000377819 TRAV12-1A0A0B4J245 112 aa8.83□□□□□ -1
RTN3-206ENST00000377819 CD24P25063 80 aa8.83□□□□□ -1
RTN3-206ENST00000377819 MP68P56378 58 aa8.83□□□□□ -1
RTN3-206ENST00000377819 ZC2HC1BQ5TFG8 222 aa8.83□□□□□ -1
RTN3-206ENST00000377819 KLHL30-AS1Q8NEE0 82 aa8.83□□□□□ -1
RTN3-206ENST00000377819 TMEM14DPA8MWL7 114 aa8.83□□□□□ -1
RTN3-206ENST00000377819 IGFBP3P17936 291 aaPredicted RBP8.83□□□□□ -1
RTN3-206ENST00000377819 IGFBP6P24592 240 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms