RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ETDBQ3ZM63 59 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 NUP35Q8NFH5 326 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 PRSS53Q2L4Q9 553 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 COL18A1P39060 1754 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 TRGV11A0A075B6L2 103 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 PLPPR2Q96GM1 343 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 H0YIZ8 118 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 ZIC3O60481 467 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 ADCYAP1P18509 176 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 OR13A1Q8NGR1 328 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 ADAMTS9Q9P2N4 1935 aa10.57□□□□□ -0.72
COL6A3-203ENST00000353578 PROB1E7EW31 1015 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 ATP5EP56381 51 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-203ENST00000353578 KNCNA6PVL3 124 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 FOXH1O75593 365 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 FAM231DQ6ZW35 169 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 NPIPB3Q92617 1050 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 FOXA2Q9Y261 457 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-203ENST00000353578 M0R381 172 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 PRSS41Q7RTY9 318 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 TMEM229AB2RXF0 380 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 YPEL1O60688 119 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 YPEL2Q96QA6 119 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 C6orf106Q9H6K1 298 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-203ENST00000353578 CCL11P51671 97 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 PSG4Q00888 419 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 EGR4Q05215 589 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 TMEM14EPQ6UXP3 125 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 WIPF2Q8TF74 440 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-203ENST00000353578 VCYO14598 125 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 TIMM23O14925 209 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 IGFBP2P18065 325 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 APOBEC3AP31941 199 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-203ENST00000353578 BHLHA9Q7RTU4 235 aa10.56□□□□□ -0.72
COL6A3-203ENST00000353578 CEND1Q8N111 149 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 RBMY1FQ15415 496 aaKnown RBP10.55□□□□□ -0.72
COL6A3-203ENST00000353578 TMEM42Q69YG0 159 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 TEN1Q86WV5 123 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 C8orf46Q8TAG6 207 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 NUP210Q8TEM1 1887 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-203ENST00000353578 RASL10AQ92737 203 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 PRO1854Q9UHT4 67 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 B5MCH6 92 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 RSPO2Q6UXX9 243 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-203ENST00000353578 SAA2-SAA4A0A096LPE2 208 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 PILRAQ9UKJ1 303 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 D6R8Y8 96 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 MYOD1P15172 320 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 CRIM1Q9NZV1 1036 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 PRCDQ00LT1 54 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 SVIPQ8NHG7 77 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 SLC25A28Q96A46 364 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 TRGV9Q99603 122 aa10.55□□□□□ -0.72
COL6A3-203ENST00000353578 H0Y8X5 98 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 A0A1W2PPI3 338 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 CD28P10747 220 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 NABP1Q96AH0 204 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 TCF20Q9UGU0 1960 aaKnown RBP10.54□□□□□ -0.72
COL6A3-203ENST00000353578 HOXD3P31249 432 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-203ENST00000353578 hDV102S1A0JD36 115 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 C9orf172C9J069 976 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 SHISA3A0PJX4 238 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 TGFAP01135 160 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 C18orf32Q8TCD1 76 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 TIMM21Q9BVV7 248 aa10.54□□□□□ -0.72
COL6A3-203ENST00000353578 SIT1Q9Y3P8 196 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 ZC2HC1BQ5TFG8 222 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 MIR17HGQ75NE6 70 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 TMEM54Q969K7 222 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 TRBV6-6A0A0A6YYG2 114 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 COL9A2Q14055 689 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-203ENST00000353578 FHL5Q5TD97 284 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 IGHV1OR21-1A0A087WYE8 117 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 SLC25A16P16260 332 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 HCP5Q6MZN7 132 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 CDCP2Q5VXM1 449 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 SHISA7A6NL88 538 aa10.53□□□□□ -0.72
COL6A3-203ENST00000353578 NMSQ5H8A3 153 aa10.52□□□□□ -0.72
COL6A3-203ENST00000353578 ABHD12Q8N2K0 398 aa10.52□□□□□ -0.72
COL6A3-203ENST00000353578 OVOL1O14753 267 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 GUSBP11Q6P575 273 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 Q6ZVH6 145 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 DTX2Q86UW9 622 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 ZNF831Q5JPB2 1677 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 A0A1W2PPE3 182 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 C2CD4DB7Z1M9 353 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 MST1P26927 711 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 LINC00114Q6XXX2 140 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 C21orf62Q9NYP8 219 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 PLXNA4Q9HCM2 1894 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 NLRC5Q86WI3 1866 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 C1QTNF5Q9BXJ0 243 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 MYF5P13349 255 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 RBM3P98179 157 aaKnown RBP10.52□□□□□ -0.73
COL6A3-203ENST00000353578 ZNF497Q6ZNH5 498 aa10.52□□□□□ -0.73
COL6A3-203ENST00000353578 PRR32B1ATL7 298 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 CRYBA4P53673 196 aa10.51□□□□□ -0.73
COL6A3-203ENST00000353578 C1orf162Q8NEQ5 155 aaPredicted RBP10.51□□□□□ -0.73
COL6A3-203ENST00000353578 JPT2Q9H910 190 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms