RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SPATA31B1PQ5VZV4 182 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 LRRK1Q38SD2 2015 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 OR10AG1Q8NH19 301 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 CARHSP1Q9Y2V2 147 aaKnown RBP12.13□□□□□ -0.47
COL17A1-201ENST00000353479 TNFRSF18Q9Y5U5 241 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 IGLV3-9A0A075B6K5 115 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 A0A1W2PRE2 83 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 CD7P09564 240 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 PSMG4Q5JS54 123 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 YLPM1P49750 1951 aaKnown RBP12.13□□□□□ -0.47
COL17A1-201ENST00000353479 FABP5P3A8MUU1 101 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 UBE2E1P51965 193 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 MGST2Q99735 147 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 SCRT1Q9BWW7 348 aa12.13□□□□□ -0.47
COL17A1-201ENST00000353479 A0A087X0M5 115 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 A0A1B0GX30 115 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 FBLN7Q53RD9 439 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 C1orf147Q96MC9 270 aaPredicted RBP12.12□□□□□ -0.47
COL17A1-201ENST00000353479 TRGV2A0A075B6R0 118 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 PMS2P5A8MQ11 134 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 SRSF3P84103 164 aaKnown RBP12.12□□□□□ -0.47
COL17A1-201ENST00000353479 TMEM14EPQ6UXP3 125 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 PSG8Q9UQ74 426 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 COL4A3Q01955 1670 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 CFPP27918 469 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 RPL23P62829 140 aaKnown RBP12.12□□□□□ -0.47
COL17A1-201ENST00000353479 ADAMTS9Q9P2N4 1935 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 H7C1H1 209 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 DUSP14O95147 198 aaKnown RBP12.12□□□□□ -0.47
COL17A1-201ENST00000353479 LEPP41159 167 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 TEX38Q6PEX7 206 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 BEND2Q8NDZ0 799 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 PRELID3AQ96N28 172 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 IMMP2LQ96T52 175 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 LOXP28300 417 aaPredicted RBP12.12□□□□□ -0.47
COL17A1-201ENST00000353479 MIEN1Q9BRT3 115 aa12.12□□□□□ -0.47
COL17A1-201ENST00000353479 FBLL1A6NHQ2 334 aaKnown RBP12.11□□□□□ -0.47
COL17A1-201ENST00000353479 E9PQ18 207 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 GATA3P23771 443 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 NDPQ00604 133 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 TMEM136Q6ZRR5 245 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 REC114Q7Z4M0 266 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 SLC25A39Q9BZJ4 359 aaPredicted RBP12.11□□□□□ -0.47
COL17A1-201ENST00000353479 Q6ZRM9 215 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 ASCL2Q99929 193 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 IGHV2-70DA0A0C4DH43 119 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 A8MXK9 166 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 CADP27708 2225 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 HIGD1CA8MV81 97 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 ERVK11-1P61568 191 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 SPSB3Q6PJ21 355 aa12.11□□□□□ -0.47
COL17A1-201ENST00000353479 TRBV7-1A0A0A6YYK4 115 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 PGPEP1LA6NFU8 196 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 C5orf52A6NGY3 159 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 BEX4Q9NWD9 120 aaPredicted RBP12.1□□□□□ -0.47
COL17A1-201ENST00000353479 J3QR89 54 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 GTSCR1Q86UQ5 136 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 TRGV9Q99603 122 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 IGHV1-69DA0A0B4J2H0 117 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 IGHV1-69P01742 117 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 GTF3C1Q12789 2109 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 OR4C5Q8NGB2 326 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 SPRY4Q9C004 299 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 RFNGQ9Y644 331 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 ITGB1BP1O14713 200 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 TEX36Q5VZQ5 186 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 KLHL30-AS1Q8NEE0 82 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 RNF138Q8WVD3 245 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 SEPSECSQ9HD40 501 aaKnown RBP12.1□□□□□ -0.47
COL17A1-201ENST00000353479 CNTFRP26992 372 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 C17orf58Q2M2W7 97 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 CYTL1Q9NRR1 136 aa12.1□□□□□ -0.47
COL17A1-201ENST00000353479 SOD3P08294 240 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 GPR61Q9BZJ8 451 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 MLANAQ16655 118 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 LCNL1Q6ZST4 164 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 MBD3L1Q8WWY6 194 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 KCNS1Q96KK3 526 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 SHISA9B4DS77 424 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 EXOC3-AS1Q8N2X6 119 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 C15orf62A8K5M9 175 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 LYRM7Q5U5X0 104 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 Q6AWC8 147 aa12.09□□□□□ -0.47
COL17A1-201ENST00000353479 FGF16O43320 207 aa12.08□□□□□ -0.47
COL17A1-201ENST00000353479 STAG3L2P0CL84 134 aa12.08□□□□□ -0.47
COL17A1-201ENST00000353479 STAG3L3P0CL85 134 aa12.08□□□□□ -0.47
COL17A1-201ENST00000353479 RNASE2P10153 161 aaKnown RBP12.08□□□□□ -0.47
COL17A1-201ENST00000353479 PPIFP30405 207 aaKnown RBP12.08□□□□□ -0.47
COL17A1-201ENST00000353479 TRAV21A0A0B4J279 112 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 CFHR2P36980 270 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 DKK4Q9UBT3 224 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 IGKV2-40A0A087WW87 121 aaPredicted RBP12.08□□□□□ -0.48
COL17A1-201ENST00000353479 C7orf71A4D174 169 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 IZUMO1RA6ND01 250 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 IGKV2D-40P01614 121 aaPredicted RBP12.08□□□□□ -0.48
COL17A1-201ENST00000353479 FOLR2P14207 255 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 USMG5Q96IX5 58 aa12.08□□□□□ -0.48
COL17A1-201ENST00000353479 GEMIN7Q9H840 131 aaKnown RBP12.08□□□□□ -0.48
COL17A1-201ENST00000353479 OVOL1O14753 267 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms