RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 MTORP42345 2549 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 FAM74A4Q5TZK3 123 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 ISOC2Q96AB3 205 aa13.37□□□□□ -0.27
SMARCA4-201ENST00000344626 GCSHP23434 173 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 KCNS1Q96KK3 526 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 DAZAP2Q15038 168 aaPredicted RBP13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 SEM1Q6ZVN7 128 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 KLF17Q5JT82 389 aaPredicted RBP13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 OR4D5Q8NGN0 318 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 CENPWQ5EE01 88 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 OR11H4Q8NGC9 324 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 PARLQ9H300 379 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 MAP1LC3AQ9H492 121 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 PKD1L2Q7Z442 2459 aa13.36□□□□□ -0.27
SMARCA4-201ENST00000344626 A0A1B0GWJ7 208 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 C9JCJ5 164 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 CCKARP32238 428 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 Q5BKY6 102 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 SIGLEC15Q6ZMC9 328 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 TCF24Q7RTU0 167 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 A0A0B4J293 547 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 RNASE4P34096 147 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 LOC389332A0A1B0GUA5 103 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 OVOL1O14753 267 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 EIF3GO75821 320 aaKnown RBP eCLIP13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 LIME1Q9H400 295 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 F11RQ9Y624 299 aaKnown RBP13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 CIARTQ8N365 385 aaPredicted RBP13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 RARRES2Q99969 163 aa13.35□□□□□ -0.27
SMARCA4-201ENST00000344626 HOXA3O43365 443 aaPredicted RBP13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 BTCP35070 178 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 ZNF506Q5JVG8 444 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 ZNF841Q6ZN19 808 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 RNF144BQ7Z419 303 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 KAAG1Q9UBP8 84 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 ALPK3Q96L96 1907 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 LOXP28300 417 aaPredicted RBP13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 C1orf122Q6ZSJ8 110 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 C19orf84I3L1E1 186 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 VENTXO95231 258 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 PPP1R17O96001 155 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 KIR2DL4Q99706 377 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 ASCL2Q99929 193 aa13.34□□□□□ -0.27
SMARCA4-201ENST00000344626 GSX1Q9H4S2 264 aaPredicted RBP13.33□□□□□ -0.27
SMARCA4-201ENST00000344626 TRGV2A0A075B6R0 118 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 DUX4L9Q6RFH8 374 aaPredicted RBP13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 SORL1Q92673 2214 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 CFPP27918 469 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 DPH3Q96FX2 82 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 WDR83OSQ9Y284 106 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 FHITP49789 147 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 TAS2R60P59551 318 aa13.33□□□□□ -0.28
SMARCA4-201ENST00000344626 LINC00473A8K010 186 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 ERVK11-1P61568 191 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 ZNF562Q6V9R5 426 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 ZNRD1Q9P1U0 126 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 PEF1Q9UBV8 284 aaKnown RBP13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 BTF3P20290 206 aaKnown RBP13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 TRGV9Q99603 122 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 TRAV34A0A0B4J273 112 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 C5orf24Q7Z6I8 188 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 OR8A1Q8NGG7 326 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 TNFRSF18Q9Y5U5 241 aa13.32□□□□□ -0.28
SMARCA4-201ENST00000344626 TMEM183BQ1AE95 376 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 OR10D4PQ8NGN7 298 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 SFRP2Q96HF1 295 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 PAPPA-AS1Q5QFB9 102 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 LINC00311Q8N616 119 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 PACRGQ96M98 296 aaPredicted RBP13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 WDR86Q86TI4 376 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 Q6AWC8 147 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 NUDT3O95989 172 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 PLA2G2AP14555 144 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 SCGB1D4Q6XE38 83 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 CBLN2Q8IUK8 224 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 ATG101Q9BSB4 218 aa13.31□□□□□ -0.28
SMARCA4-201ENST00000344626 IGHV2-5P01817 119 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 RNF126Q9BV68 326 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 FN1P02751 2386 aaKnown RBP13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 FABP5P3A8MUU1 101 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 HNRNPA3P51991 378 aaKnown RBP13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 PSMG4Q5JS54 123 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 GLMPQ8WWB7 406 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 TRAV21A0A0B4J279 112 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 TMEM262E9PQX1 116 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 M0R381 172 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 DEFB112Q30KQ8 113 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 AP5S1Q9NUS5 200 aa13.3□□□□□ -0.28
SMARCA4-201ENST00000344626 PHOX2AO14813 284 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 RSPO3Q9BXY4 272 aaPredicted RBP13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 IGKV1-5P01602 117 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 RNF224P0DH78 156 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 C10orf105Q8TEF2 133 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 NEU1Q99519 415 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 TRBV9A0A0B4J1U6 114 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 TRGV11A0A075B6L2 103 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 A0A1W2PRE2 83 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 RNF222A6NCQ9 220 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 CXorf65A6NEN9 183 aa13.29□□□□□ -0.28
SMARCA4-201ENST00000344626 SNRPEP62304 92 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms