RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 URGCP-MRPS24S4R325 110 aa13.31□□□□□ -0.28
DDX41-201ENST00000330503 CENPEQ02224 2701 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 POLQO75417 2590 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 PGPEP1LA6NFU8 196 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 CLDN34H7C241 214 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 ATP6V0E1O15342 81 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 AMY1AP04745 511 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 SUMO1P63165 101 aaKnown RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 C16orf82Q7Z2V1 217 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 AURKAIP1Q9NWT8 199 aaPredicted RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 ANKRD17O75179 2603 aaKnown RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 KMT2BQ9UMN6 2715 aaPredicted RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 OR2J3O76001 311 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 CXCL1P09341 107 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 MFAP4P55083 255 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 LYZP61626 148 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 KLK9Q2XQG4 91 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 LINC01356Q8N9X3 169 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 FAM110DQ8TAY7 271 aaPredicted RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 MRPL27Q9P0M9 148 aaKnown RBP13.3□□□□□ -0.28
DDX41-201ENST00000330503 MLXQ9UH92 298 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 KLK9Q9UKQ9 250 aa13.3□□□□□ -0.28
DDX41-201ENST00000330503 CSMD2Q7Z408 3487 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 CRYBB3P26998 211 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 UNQ5815/PRO19632Q6UWF5 114 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 ZNF48Q96MX3 618 aaPredicted RBP13.29□□□□□ -0.28
DDX41-201ENST00000330503 ELOVL1Q9BW60 279 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 HIGD1AQ9Y241 93 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 CHD6Q8TD26 2715 aa13.29□□□□□ -0.28
DDX41-201ENST00000330503 TGIF2-C20orf24A0A0A6YYL0 155 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 SNRPCP09234 159 aaKnown RBP13.28□□□□□ -0.28
DDX41-201ENST00000330503 GATA3P23771 443 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 LEMD1Q68G75 181 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 MAPK1IP1LQ8NDC0 245 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 OCC1Q8TAD7 63 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 TMUB1Q9BVT8 246 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 MOB4Q9Y3A3 225 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 ZFHX3Q15911 3703 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 PTPN13Q12923 2485 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 G3V318 75 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 TOMM40O96008 361 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 RPL35P42766 123 aaKnown RBP13.28□□□□□ -0.28
DDX41-201ENST00000330503 ECSCRQ19T08 205 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 ZNF491Q8N8L2 437 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 BEX4Q9NWD9 120 aaPredicted RBP13.28□□□□□ -0.28
DDX41-201ENST00000330503 C21orf62Q9NYP8 219 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 FBXL7Q9UJT9 491 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 PRELID1Q9Y255 219 aa13.28□□□□□ -0.28
DDX41-201ENST00000330503 TRAV30A0A087WSZ9 112 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 WI2-2373I1.2A0A1W2PRP0 233 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 IGHV3-23P01764 117 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 YPEL3P61236 119 aaPredicted RBP13.27□□□□□ -0.28
DDX41-201ENST00000330503 FLI1Q01543 452 aaPredicted RBP13.27□□□□□ -0.28
DDX41-201ENST00000330503 DEFB113Q30KQ7 82 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 STXBP6Q8NFX7 210 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 C2CD4CQ8TF44 421 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 SLC25A39Q9BZJ4 359 aaPredicted RBP13.27□□□□□ -0.28
DDX41-201ENST00000330503 THYN1Q9P016 225 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 CELSR1Q9NYQ6 3014 aa13.27□□□□□ -0.28
DDX41-201ENST00000330503 GNG7O60262 68 aa13.27□□□□□ -0.29
DDX41-201ENST00000330503 FABP1P07148 127 aa13.27□□□□□ -0.29
DDX41-201ENST00000330503 GP9P14770 177 aa13.27□□□□□ -0.29
DDX41-201ENST00000330503 ZFP82Q8N141 532 aa13.27□□□□□ -0.29
DDX41-201ENST00000330503 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.26□□□□□ -0.296e-7■■■■□ 23.3
DDX41-201ENST00000330503 A6NDX4 124 aa13.26□□□□□ -0.29
DDX41-201ENST00000330503 RNF223E7ERA6 249 aa13.26□□□□□ -0.29
DDX41-201ENST00000330503 PFN1P07737 140 aaKnown RBP13.26□□□□□ -0.29
DDX41-201ENST00000330503 MYCNOSP40205 109 aa13.26□□□□□ -0.29
DDX41-201ENST00000330503 LOXL1Q08397 574 aaPredicted RBP13.26□□□□□ -0.29
DDX41-201ENST00000330503 ZNF329Q86UD4 541 aa13.26□□□□□ -0.29
DDX41-201ENST00000330503 ANAPC16Q96DE5 110 aa13.26□□□□□ -0.29
DDX41-201ENST00000330503 HELTA6NFD8 242 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 C9JCJ5 164 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 HIST1H1BP16401 226 aaKnown RBP13.25□□□□□ -0.29
DDX41-201ENST00000330503 Q56UQ5 140 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 BCL6BQ8N143 479 aaPredicted RBP13.25□□□□□ -0.29
DDX41-201ENST00000330503 TRBV9A0A0B4J1U6 114 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 H7BYZ3 331 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 K7EN84 100 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 CTSGP08311 255 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 NBEAP1P0C6P0 100 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 HNF1AP20823 631 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 LY6EQ16553 131 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 LRRC75A-AS1Q8N1F1 130 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 TMEM68Q96MH6 324 aa13.25□□□□□ -0.29
DDX41-201ENST00000330503 C1orf196B1AJZ1 125 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 H3BUX3 64 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 PLA2G2AP14555 144 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 FCGR2BP31994 310 aaPredicted RBP13.24□□□□□ -0.29
DDX41-201ENST00000330503 C19orf54Q5BKX5 351 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 VN1R17PQ8TDU5 208 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 BLNKQ8WV28 456 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 RNF125Q96EQ8 232 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 SHANK2-AS3Q9BTD1 123 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 OR2T8A6NH00 312 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 IL4P05112 153 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 RANP62826 216 aaKnown RBP13.24□□□□□ -0.29
DDX41-201ENST00000330503 ZNF600Q6ZNG1 722 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 NECAP1Q8NC96 275 aa13.24□□□□□ -0.29
DDX41-201ENST00000330503 ZNF414Q96IQ9 312 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms